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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><!--NewPage--><HTML><HEAD><!-- Generated by javadoc (build 1.5.0_10) on Fri Jan 26 16:34:42 NZDT 2007 --><TITLE>BayesNet</TITLE><META NAME="keywords" CONTENT="weka.classifiers.bayes.BayesNet class"><LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style"><SCRIPT type="text/javascript">function windowTitle(){ parent.document.title="BayesNet";}</SCRIPT><NOSCRIPT></NOSCRIPT></HEAD><BODY BGCOLOR="white" onload="windowTitle();"><!-- ========= START OF TOP NAVBAR ======= --><A NAME="navbar_top"><!-- --></A><A HREF="#skip-navbar_top" title="Skip navigation links"></A><TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY=""><TR><TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1"><A NAME="navbar_top_firstrow"><!-- --></A><TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY=""> <TR ALIGN="center" VALIGN="top"> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD> <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-all.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="http://www.cs.waikato.ac.nz/ml/weka/" target="_blank"><FONT CLASS="NavBarFont1"><B>Weka's home</B></FONT></A> </TD> </TR></TABLE></TD><TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM></EM></TD></TR><TR><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2"> <A HREF="../../../weka/classifiers/bayes/AODE.html" title="class in weka.classifiers.bayes"><B>PREV CLASS</B></A> <A HREF="../../../weka/classifiers/bayes/ComplementNaiveBayes.html" title="class in weka.classifiers.bayes"><B>NEXT CLASS</B></A></FONT></TD><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2"> <A HREF="../../../index.html?weka/classifiers/bayes/BayesNet.html" target="_top"><B>FRAMES</B></A> <A HREF="BayesNet.html" target="_top"><B>NO FRAMES</B></A> <SCRIPT type="text/javascript"> <!-- if(window==top) { document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>'); } //--></SCRIPT><NOSCRIPT> <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A></NOSCRIPT></FONT></TD></TR><TR><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2"> SUMMARY: NESTED | <A HREF="#field_summary">FIELD</A> | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD><TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">DETAIL: <A HREF="#field_detail">FIELD</A> | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD></TR></TABLE><A NAME="skip-navbar_top"></A><!-- ========= END OF TOP NAVBAR ========= --><HR><!-- ======== START OF CLASS DATA ======== --><H2><FONT SIZE="-1">weka.classifiers.bayes</FONT><BR>Class BayesNet</H2><PRE>java.lang.Object <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../weka/classifiers/Classifier.html" title="class in weka.classifiers">weka.classifiers.Classifier</A> <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>weka.classifiers.bayes.BayesNet</B></PRE><DL><DT><B>All Implemented Interfaces:</B> <DD>java.io.Serializable, java.lang.Cloneable, <A HREF="../../../weka/core/AdditionalMeasureProducer.html" title="interface in weka.core">AdditionalMeasureProducer</A>, <A HREF="../../../weka/core/CapabilitiesHandler.html" title="interface in weka.core">CapabilitiesHandler</A>, <A HREF="../../../weka/core/Drawable.html" title="interface in weka.core">Drawable</A>, <A HREF="../../../weka/core/OptionHandler.html" title="interface in weka.core">OptionHandler</A>, <A HREF="../../../weka/core/WeightedInstancesHandler.html" title="interface in weka.core">WeightedInstancesHandler</A></DD></DL><DL><DT><B>Direct Known Subclasses:</B> <DD><A HREF="../../../weka/classifiers/bayes/net/BayesNetGenerator.html" title="class in weka.classifiers.bayes.net">BayesNetGenerator</A>, <A HREF="../../../weka/classifiers/bayes/net/BIFReader.html" title="class in weka.classifiers.bayes.net">BIFReader</A></DD></DL><HR><DL><DT><PRE>public class <B>BayesNet</B><DT>extends <A HREF="../../../weka/classifiers/Classifier.html" title="class in weka.classifiers">Classifier</A><DT>implements <A HREF="../../../weka/core/OptionHandler.html" title="interface in weka.core">OptionHandler</A>, <A HREF="../../../weka/core/WeightedInstancesHandler.html" title="interface in weka.core">WeightedInstancesHandler</A>, <A HREF="../../../weka/core/Drawable.html" title="interface in weka.core">Drawable</A>, <A HREF="../../../weka/core/AdditionalMeasureProducer.html" title="interface in weka.core">AdditionalMeasureProducer</A></DL></PRE><P><!-- globalinfo-start --> Bayes Network learning using various search algorithms and quality measures.<br/> Base class for a Bayes Network classifier. Provides datastructures (network structure, conditional probability distributions, etc.) and facilities common to Bayes Network learning algorithms like K2 and B.<br/> <br/> For more information see:<br/> <br/> http://www.cs.waikato.ac.nz/~remco/weka.pdf <p/> <!-- globalinfo-end --> <!-- options-start --> Valid options are: <p/> <pre> -D Do not use ADTree data structure </pre> <pre> -B <BIF file> BIF file to compare with </pre> <pre> -Q weka.classifiers.bayes.net.search.SearchAlgorithm Search algorithm </pre> <pre> -E weka.classifiers.bayes.net.estimate.SimpleEstimator Estimator algorithm </pre> <!-- options-end --><P><P><DL><DT><B>Version:</B></DT> <DD>$Revision: 1.29 $</DD><DT><B>Author:</B></DT> <DD>Remco Bouckaert (rrb@xm.co.nz)</DD><DT><B>See Also:</B><DD><A HREF="../../../serialized-form.html#weka.classifiers.bayes.BayesNet">Serialized Form</A></DL><HR><P><!-- =========== FIELD SUMMARY =========== --><A NAME="field_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Field Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/estimators/Estimator.html" title="class in weka.estimators">Estimator</A>[][]</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#m_Distributions">m_Distributions</A></B></CODE><BR> The attribute estimators containing CPTs.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#m_Instances">m_Instances</A></B></CODE><BR> The dataset header for the purposes of printing out a semi-intelligible model</TD></TR></TABLE> <A NAME="fields_inherited_from_class_weka.core.Drawable"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TH ALIGN="left"><B>Fields inherited from interface weka.core.<A HREF="../../../weka/core/Drawable.html" title="interface in weka.core">Drawable</A></B></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><A HREF="../../../weka/core/Drawable.html#BayesNet">BayesNet</A>, <A HREF="../../../weka/core/Drawable.html#NOT_DRAWABLE">NOT_DRAWABLE</A>, <A HREF="../../../weka/core/Drawable.html#TREE">TREE</A></CODE></TD></TR></TABLE> <!-- ======== CONSTRUCTOR SUMMARY ======== --><A NAME="constructor_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Constructor Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#BayesNet()">BayesNet</A></B>()</CODE><BR> </TD></TR></TABLE> <!-- ========== METHOD SUMMARY =========== --><A NAME="method_summary"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2"><B>Method Summary</B></FONT></TH></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#BIFFileTipText()">BIFFileTipText</A></B>()</CODE><BR> </TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#buildClassifier(weka.core.Instances)">buildClassifier</A></B>(<A HREF="../../../weka/core/Instances.html" title="class in weka.core">Instances</A> instances)</CODE><BR> Generates the classifier.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#buildStructure()">buildStructure</A></B>()</CODE><BR> buildStructure determines the network structure/graph of the network.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> double[]</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#countsForInstance(weka.core.Instance)">countsForInstance</A></B>(<A HREF="../../../weka/core/Instance.html" title="class in weka.core">Instance</A> instance)</CODE><BR> Calculates the counts for Dirichlet distribution for the class membership probabilities for the given test instance.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> double[]</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#distributionForInstance(weka.core.Instance)">distributionForInstance</A></B>(<A HREF="../../../weka/core/Instance.html" title="class in weka.core">Instance</A> instance)</CODE><BR> Calculates the class membership probabilities for the given test instance.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.util.Enumeration</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#enumerateMeasures()">enumerateMeasures</A></B>()</CODE><BR> Returns an enumeration of the measure names.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#estimateCPTs()">estimateCPTs</A></B>()</CODE><BR> estimateCPTs estimates the conditional probability tables for the Bayes Net using the network structure.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#estimatorTipText()">estimatorTipText</A></B>()</CODE><BR> This will return a string describing the BayesNetEstimator.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/classifiers/bayes/net/ADNode.html" title="class in weka.classifiers.bayes.net">ADNode</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getADTree()">getADTree</A></B>()</CODE><BR> get ADTree strucrture containing efficient representation of counts.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getBIFFile()">getBIFFile</A></B>()</CODE><BR> Get name of network in BIF file to compare with</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/core/Capabilities.html" title="class in weka.core">Capabilities</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getCapabilities()">getCapabilities</A></B>()</CODE><BR> Returns default capabilities of the classifier.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> int</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getCardinality(int)">getCardinality</A></B>(int iNode)</CODE><BR> get number of values a node can take</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/estimators/Estimator.html" title="class in weka.estimators">Estimator</A>[][]</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getDistributions()">getDistributions</A></B>()</CODE><BR> Get full set of estimators.</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> <A HREF="../../../weka/classifiers/bayes/net/estimate/BayesNetEstimator.html" title="class in weka.classifiers.bayes.net.estimate">BayesNetEstimator</A></CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getEstimator()">getEstimator</A></B>()</CODE><BR> Get the BayesNetEstimator used for calculating the CPTs</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> double</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getMeasure(java.lang.String)">getMeasure</A></B>(java.lang.String measureName)</CODE><BR> Returns the value of the named measure</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getName()">getName</A></B>()</CODE><BR> get name of the Bayes network</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getNodeName(int)">getNodeName</A></B>(int iNode)</CODE><BR> get name of a node in the Bayes network</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE> java.lang.String</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/classifiers/bayes/BayesNet.html#getNodeValue(int, int)">getNodeValue</A></B>(int iNode, int iValue)</CODE><BR>
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