sample.align

unix或linux下的DNA分析软件源码 其功能如下 1. Edit up to 256 peptide or DNA sequences simultaneously. 2. Transla

TITLE Example alignment file - calcium-binding proteins
BOX 22 29 1 18
LABEL 41 0 EF hand
TEXT 0       DFQR here   The FNTFY motif     FE motif
TEXT 19      0        10        20        30        40        50        60  

SEQUENCES
 
calexcitin  |DFQRNKILRV- FNTFY DCN--HDGVIEWDDFE LA-IKKICNL-H-S WP   TDGKKHNE
scp2.pep    |DFRKKKLLFL- FNVFF DVN--QSGEIDVKDFE LA-IERVCQL-R-G WQ---KDTPKNKE
streptomyces|EFQRTKLQDM  FNAF  DVN  GDGCLEEEDFAALASRWGRLPRVR        ADGELA  
scp1-amphiox|DFQKQKF  TFDFFLDY NKD  GSIQ  QEDFE EM IKRYKEV NKG SL   SDADYKSM
scpa-shrimp |DN RVKYVVRYM    Y DID  DDGFLDKNDFECLAVRN T LI E G RGEF SAADYANN
scp3-amphiox|DFQKQKIKFTFDFFLDM NKD  GSIQ  WEDFE EM IKRYKEV NKG SL   SDADYKSM
scp4-amphiox|DFQKQKIKFTFDFFLDY NKN  GSIQ  WEDFE EM IKRYKEV NKG SL   SDADYKSM
f56d1.6     |DLIKKHSDVDP FLVKK ----WERIFSLF--FD RN   ASHQV-DWG D-FYLV-VKKVRD
kip2        |EQLDNYQDCTF FN KK DILKLHAR      FYELA PNLVPMDYRKS PIVHVPMSLIIQM
redb        |EHAGRD----- TSRHS MATRMASSS-----LR TALIC AENL-AKG LKFTA AGAE---
visininlike2|EELEDLVQNTE F SEQ ELKQWYKG      FL KDCPSG I L NL  EEFQQLY IKFFP
ncs1-rat    |EVVEELTRKTY F TEK EVQQWYKG      FI KDCPSG Q L DA  AGFQKIY KQFFP
frequenin   |DTIDRLTTDTY F-TEK EIRQWHKG      FL KDCPNG L L TE  QGFIKIY KQFFP
recoverin   |EILEELQLNTK F SEE ELCSWYQS      FL KDCPTG R I TQ  QQFQSIY AKFFP
neurocalcin |EVMEDLVKSTE FN-EH ELKQWYKG------FL KDCPSGRLNL EE- --FQQLYVK-FFP
c18b11.04-  |DQLQDLVRSTR FD-KK ELQQWYKG------FF KDCPS GH L NKS E-FQKIY-KQFFP
calcyphosine|GALGIQGLAR- FFRRL DRDRSRSLDSRELQRG LAEL  GLVL   DTAE      AEGVC
calretinin  |DGKIEMAELAQILPTEENFLLCFRQHVGSSAEFM EAWRK YDTD RSG YIE ANELKGFL-

END