adioi.h

mpi并行计算的c++代码 可用vc或gcc编译通过 可以用来搭建并行计算试验环境

/* -*- Mode: C; c-basic-offset:4 ; -*- */
/* 
 *
 *   Copyright (C) 1997 University of Chicago. 
 *   See COPYRIGHT notice in top-level directory.
 */


/* contains general definitions, declarations, and macros internal to
   the ADIO implementation, though independent of the underlying file
   system. This file is included in adio.h */ 

/* Functions and datataypes that are "internal" to the ADIO implementation 
   prefixed ADIOI_. Functions and datatypes that are part of the
   "externally visible" (documented) ADIO interface are prefixed ADIO_.

   An implementation of MPI-IO, or any other high-level interface, should
   not need to use any of the ADIOI_ functions/datatypes. 
   Only someone implementing ADIO on a new file system, or modifying 
   an existing ADIO implementation, would need to use the ADIOI_
   functions/datatypes. */


#ifndef ADIOI_INCLUDE
#define ADIOI_INCLUDE

/* each pending nonblocking request is stored on a linked list */
typedef struct ADIOI_Async {
    ADIO_Request *request;
    struct ADIOI_Async *prev, *next;
} ADIOI_Async_node;

/* list to keep track of memory regions that have been malloced 
   for above async list */
typedef struct ADIOI_Malloc_async_ptr {
    ADIOI_Async_node *ptr;  /* ptr to malloced region */
    struct ADIOI_Malloc_async_ptr *next;
} ADIOI_Malloc_async;

/* used to malloc request objects in bulk */
typedef struct ADIOI_Req_n {
    struct ADIOI_RequestD reqd;
    struct ADIOI_Req_n *next;
} ADIOI_Req_node;

/* used to keep track of the malloced requests that need to be freed */
typedef struct ADIOI_Malloc_req_ptr {
    ADIOI_Req_node *ptr;  /* ptr to malloced region */
    struct ADIOI_Malloc_req_ptr *next;
} ADIOI_Malloc_req;

/* used to keep track of hint/info values.
 * Note that there are a lot of int-sized values in here...they are
 * used as int-sized entities other places as well.  This would be a 
 * problem on 32-bit systems using > 2GB files in some cases...
 */
struct ADIOI_Hints_struct {
    int initialized;
    int striping_factor;
    int striping_unit;
    int cb_read;
    int cb_write;
    int cb_nodes;
    int cb_buffer_size;
    int ds_read;
    int ds_write;
    int no_indep_rw;
    int ind_rd_buffer_size;
    int ind_wr_buffer_size;
    int deferred_open;
    char *cb_config_list;
    int *ranklist;
    union {
	    struct {
		    int listio_read;
		    int listio_write;
	    } pvfs;
	    struct {
		    int debugmask;
	    } pvfs2;
    } fs_hints;

};

#if 0
typedef int MPI_Datarep_conversion_function(void *userbuf,
					    MPI_Datatype datatype,
					    int count,
					    void *filebuf,
					    MPI_Offset position,
					    void *extra_state);
#endif

typedef struct ADIOI_Datarep {
    char *name;
    void *state;
    MPI_Datarep_extent_function *extent_fn;
    MPI_Datarep_conversion_function *read_conv_fn;
    MPI_Datarep_conversion_function *write_conv_fn;
    struct ADIOI_Datarep *next; /* pointer to next datarep */
} ADIOI_Datarep;

/* Values for use with cb_read, cb_write, ds_read, and ds_write 
 * and some fs-specific hints
   (IBM xlc, Compaq Tru64 compilers object to a comma after the last item)
   (that's just wrong)
 */
enum {
    ADIOI_HINT_AUTO    = 0,
    ADIOI_HINT_ENABLE  = 1,
    ADIOI_HINT_DISABLE = 2
};

/* flattened datatypes. Each datatype is stored as a node of a
   globally accessible linked list. Once attribute caching on a
   datatype is available (in MPI-2), that should be used instead. */  

typedef struct ADIOI_Fl_node {  
    MPI_Datatype type;
    int count;                   /* no. of contiguous blocks */
    int *blocklens;              /* array of contiguous block lengths (bytes)*/
    /* may need to make it ADIO_Offset *blocklens */
    ADIO_Offset *indices;        /* array of byte offsets of each block */
    struct ADIOI_Fl_node *next;  /* pointer to next node */
} ADIOI_Flatlist_node;


struct ADIOI_Fns_struct {
    void (*ADIOI_xxx_Open) (ADIO_File fd, int *error_code);
    void (*ADIOI_xxx_ReadContig) (ADIO_File fd, void *buf, int count, 
                   MPI_Datatype datatype, int file_ptr_type, 
                   ADIO_Offset offset, ADIO_Status *status, int *error_code);
    void (*ADIOI_xxx_WriteContig) (ADIO_File fd, void *buf, int count, 
                   MPI_Datatype datatype, int file_ptr_type, 
                   ADIO_Offset offset, ADIO_Status *status, int *error_code);  
    void (*ADIOI_xxx_ReadStridedColl) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Status *status, int *error_code);
    void (*ADIOI_xxx_WriteStridedColl) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Status *status, int *error_code);
    ADIO_Offset (*ADIOI_xxx_SeekIndividual) (ADIO_File fd, ADIO_Offset offset, 
                       int whence, int *error_code);
    void (*ADIOI_xxx_Fcntl) (ADIO_File fd, int flag, 
                             ADIO_Fcntl_t *fcntl_struct, int *error_code); 
    void (*ADIOI_xxx_SetInfo) (ADIO_File fd, MPI_Info users_info, 
                               int *error_code);
    void (*ADIOI_xxx_ReadStrided) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Status *status, int *error_code);
    void (*ADIOI_xxx_WriteStrided) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Status *status, int *error_code);
    void (*ADIOI_xxx_Close) (ADIO_File fd, int *error_code);
    void (*ADIOI_xxx_IreadContig) (ADIO_File fd, void *buf, int count, 
                   MPI_Datatype datatype, int file_ptr_type, 
                   ADIO_Offset offset, ADIO_Request *request, int *error_code);
    void (*ADIOI_xxx_IwriteContig) (ADIO_File fd, void *buf, int count, 
                   MPI_Datatype datatype, int file_ptr_type, 
	           ADIO_Offset offset, ADIO_Request *request, int *error_code);
    int (*ADIOI_xxx_ReadDone) (ADIO_Request *request, ADIO_Status *status, 
               int *error_code); 
    int (*ADIOI_xxx_WriteDone) (ADIO_Request *request, ADIO_Status *status, 
               int *error_code);
    void (*ADIOI_xxx_ReadComplete) (ADIO_Request *request, ADIO_Status *status, 
               int *error_code); 
    void (*ADIOI_xxx_WriteComplete) (ADIO_Request *request, ADIO_Status *status,
	       int *error_code); 
    void (*ADIOI_xxx_IreadStrided) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Request *request, int *error_code);
    void (*ADIOI_xxx_IwriteStrided) (ADIO_File fd, void *buf, int count,
	       MPI_Datatype datatype, int file_ptr_type,
	       ADIO_Offset offset, ADIO_Request *request, int *error_code);
    void (*ADIOI_xxx_Flush) (ADIO_File fd, int *error_code); 
    void (*ADIOI_xxx_Resize) (ADIO_File fd, ADIO_Offset size, int *error_code);
    void (*ADIOI_xxx_Delete) (char *filename, int *error_code);
};

/* optypes for ADIO_RequestD */
#define ADIOI_READ                26
#define ADIOI_WRITE               27

#define ADIOI_MIN(a, b) ((a) < (b) ? (a) : (b))
#define ADIOI_MAX(a, b) ((a) > (b) ? (a) : (b))

#define ADIOI_PREALLOC_BUFSZ      4194304    /* buffer size used to 
                                                preallocate disk space */


/* default values for some hints */
    /* buffer size for collective I/O = 4MB */
#define ADIOI_CB_BUFFER_SIZE_DFLT         "4194304"
    /* buffer size for data sieving in independent reads = 4MB */
#define ADIOI_IND_RD_BUFFER_SIZE_DFLT     "4194304"
    /* buffer size for data sieving in independent writes = 512KB. default is
       smaller than for reads, because write requires read-modify-write
       with file locking. If buffer size is large there is more contention 
       for locks. */
#define ADIOI_IND_WR_BUFFER_SIZE_DFLT     "524288"
    /* use one process per processor name by default */
#define ADIOI_CB_CONFIG_LIST_DFLT "*:1"


/* some of the ADIO functions are macro-replaced */

#define ADIO_ReadContig(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_ReadContig))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_WriteContig(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_WriteContig))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_SeekIndividual(fd,offset,whence,error_code) \
        (*(fd->fns->ADIOI_xxx_SeekIndividual))(fd,offset,whence,error_code)

#define ADIO_Fcntl(fd,flag,fcntl_struct,error_code) \
        (*(fd->fns->ADIOI_xxx_Fcntl))(fd,flag,fcntl_struct,error_code)

#define ADIO_IreadContig(fd,buf,count,datatype,file_ptr_type,offset,request,error_code) \
        (*(fd->fns->ADIOI_xxx_IreadContig))(fd,buf,count,datatype,file_ptr_type,offset,request,error_code)

#define ADIO_IwriteContig(fd,buf,count,datatype,file_ptr_type,offset,request,error_code) \
        (*(fd->fns->ADIOI_xxx_IwriteContig))(fd,buf,count,datatype,file_ptr_type,offset,request,error_code)

/* in these routines a pointer to request is passed */
#define ADIO_ReadDone(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_ReadDone))(request,status,error_code)

#define ADIO_WriteDone(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_WriteDone))(request,status,error_code)

#define ADIO_ReadIcomplete(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_ReadIcomplete))(request,status,error_code)

#define ADIO_WriteIcomplete(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_WriteIcomplete))(request,status,error_code)

#define ADIO_ReadComplete(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_ReadComplete))(request,status,error_code)

#define ADIO_WriteComplete(request,status,error_code) \
        (*((*(request))->fd->fns->ADIOI_xxx_WriteComplete))(request,status,error_code)

#define ADIO_ReadStrided(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_ReadStrided))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_WriteStrided(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_WriteStrided))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_ReadStridedColl(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_ReadStridedColl))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_WriteStridedColl(fd,buf,count,datatype,file_ptr_type,offset,status,error_code) \
        (*(fd->fns->ADIOI_xxx_WriteStridedColl))(fd,buf,count,datatype,file_ptr_type,offset,status,error_code)

#define ADIO_IreadStrided(fd,buf,count,datatype,file_ptr_type,offset,request,error_code) \
        (*(fd->fns->ADIOI_xxx_IreadStrided))(fd,buf,count,datatype,file_ptr_type,offset,request,error_code)

#define ADIO_IwriteStrided(fd,buf,count,datatype,file_ptr_type,offset,request,error_code) \
        (*(fd->fns->ADIOI_xxx_IwriteStrided))(fd,buf,count,datatype,file_ptr_type,offset,request,error_code)

#define ADIO_Flush(fd,error_code) (*(fd->fns->ADIOI_xxx_Flush))(fd,error_code)

#define ADIO_Resize(fd,size,error_code) \
        (*(fd->fns->ADIOI_xxx_Resize))(fd,size,error_code)

#define ADIO_Delete(filename,error_code) \
        (*(fd->fns->ADIOI_xxx_Delete))(filename,error_code)

#define ADIO_SetInfo(fd, users_info, error_code) \
        (*(fd->fns->ADIOI_xxx_SetInfo))(fd, users_info, error_code)


/* structure for storing access info of this process's request 
   from the file domain of other processes, and vice-versa. used 
   as array of structures indexed by process number. */
typedef struct {
    ADIO_Offset *offsets;   /* array of offsets */
    int *lens;              /* array of lengths */
    MPI_Aint *mem_ptrs;     /* array of pointers. used in the read/write
			       phase to indicate where the data
			       is stored in memory */
    int count;             /* size of above arrays */
} ADIOI_Access;


/* prototypes for ADIO internal functions */

void ADIOI_SetFunctions(ADIO_File fd);
void ADIOI_Flatten_datatype(MPI_Datatype type);
void ADIOI_Flatten(MPI_Datatype type, ADIOI_Flatlist_node *flat,
		  ADIO_Offset st_offset, int *curr_index);  
void ADIOI_Delete_flattened(MPI_Datatype datatype);
int ADIOI_Count_contiguous_blocks(MPI_Datatype type, int *curr_index);
ADIOI_Async_node *ADIOI_Malloc_async_node(void);
void ADIOI_Free_async_node(ADIOI_Async_node *node);
void ADIOI_Add_req_to_list(ADIO_Request *request);
void ADIOI_Complete_async(int *error_code);
void ADIOI_Del_req_from_list(ADIO_Request *request);
struct ADIOI_RequestD *ADIOI_Malloc_request(void);
void ADIOI_Free_request(ADIOI_Req_node *node);
void *ADIOI_Malloc_fn(size_t size, int lineno, char *fname);
void *ADIOI_Calloc_fn(size_t nelem, size_t elsize, int lineno, char *fname);
void *ADIOI_Realloc_fn(void *ptr, size_t size, int lineno, char *fname);
void ADIOI_Free_fn(void *ptr, int lineno, char *fname);