hmmconstruct.java

马尔科夫模型的c语言实现

/* the idea is that if there is only one alphabet, the hmm is saved in the
 * original one-alphabet format, if there are 2-4 alphabets, the hmm
 * is saved in multialphabet format */

class modhmmc
{
    public static void main(String[] args)
    {
	if(args.length == 0) {
	    DataReaderMultiAlpha datareader = new DataReaderMultiAlpha();
	}
	else if(args[0].equals("-prf")) {
	    if(args.length == 3) {
		ProfileCreator profilecreator = new ProfileCreator(args[1], args[2]);
	    }
	    else {
		
	    }
	}
	else if(args[0].equals("-tm")) {
	    if(args.length == 3) {
		StandardTMHMMCreator standardTMHMMcreator = new StandardTMHMMCreator(args[1], args[2]);
	    }
	}
	
	else if(args[0].equals("-msatm")) {
	    if(args.length == 3) {
		BasicMsaTMHMMCreator basicMsaTMHMMcreator = new BasicMsaTMHMMCreator(args[1], args[2]);
	    }
	}
	
	else if(args[0].equals("-topo")) {
	    if(args.length == 3) {
		StandardTopologyModelerCreator standardTopologyModelerCreator = new StandardTopologyModelerCreator(args[1], args[2]);
	    }
	}
	else {
	    System.out.println("Wrong number of arguments");
	}
    }
}