pvm_test.pbs

fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memo

#PBS -S /bin/csh
# User should specify the shell he wishes to use

#PBS -l mem=300Mw
# This is the memory request 

#PBS -l pmem=280Mw
# The largest process in this job requires 58Mw of memory

#PBS -V
#PBS -l nodes=6:ppn=2,cput=2:00:00
#PBS -o /hpcscr/dkberry/fastDNAml_1.2.2p/testdata/pvm56.out
#PBS -e /hpcscr/dkberry/fastDNAml_1.2.2p/testdata/pvm56.mon
#PBS -q [e-mail]
#PBS -N pvm56

# Start master PVM daemon, and give it $PBS_NODEFILE as the hostfile.
# Wait for all slave daemons to start up.
/usr/local/pvm3/lib/LINUX/pvmd3 $PBS_NODEFILE &
sleep 10

#---------  user's script goes here  --------------------------------------

cd $PBS_O_WORKDIR
pvm_dnaml_mon -d4 -p9 -npvm56 -s test56.phy

#--------------------------------------------------------------------------

# Wait a few seconds (just for good measure), then kill master PVM
# daemon.  Signal SIGTERM will cause master daemon to cleanly shut
# down all slave daemons and delete /tmp/pvmd.<uid> and lock files.
sleep 5
kill -TERM %1