📄 mpi56.bst
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fastDNAml, version 1.2.2, January 3, 2000,Copyright (C) 1998, 1999, 2000 by Gary J. OlsenBased in part on Joseph Felsenstein's Nucleic acid sequence Maximum Likelihood method, version 3.356 Species, 820 SitesJumble random number seed = 10015Quick add (only local branches initially optimized) in effectRearrangements of partial trees may cross 1 branch.Rearrangements of full tree may cross 1 branch.Total weight of positions in analysis = 820There are 386 distinct data patterns (columns)Empirical Base Frequencies: A 0.28959 C 0.19776 G 0.29036 T(U) 0.22229Transition/transversion ratio = 2.000000(Transition/transversion parameter = 1.438734)Adding species: anacystis- coscinodis pseudomona salmonella Tested 3 alternative trees Ln Likelihood = -1885.71981 chara----- Tested 5 alternative trees Ln Likelihood = -2440.67216 Doing local rearrangements Tested 4 alternative trees nico-tabac Tested 7 alternative trees Ln Likelihood = -2933.94959 Doing local rearrangements Tested 6 alternative trees ecoli----- Tested 9 alternative trees Ln Likelihood = -3106.62643 Doing local rearrangements Tested 8 alternative trees raphidonem Tested 11 alternative trees Ln Likelihood = -3256.51296 Doing local rearrangements Tested 10 alternative trees bacillus-- Tested 13 alternative trees Ln Likelihood = -3594.71152 Doing local rearrangements Tested 12 alternative trees plectonema Tested 15 alternative trees Ln Likelihood = -3866.87368 Doing local rearrangements Tested 14 alternative trees thermotoga Tested 17 alternative trees Ln Likelihood = -4455.03986 Doing local rearrangements Tested 16 alternative trees Tthermophi Tested 19 alternative trees Ln Likelihood = -4863.67417 Doing local rearrangements Tested 18 alternative trees gloeobacte Tested 21 alternative trees Ln Likelihood = -5091.20578 Doing local rearrangements Tested 20 alternative trees Ln Likelihood = -5086.87391 Tested 20 alternative trees gonium---- Tested 23 alternative trees Ln Likelihood = -5246.19574 Doing local rearrangements Tested 22 alternative trees porphyra-- Tested 25 alternative trees Ln Likelihood = -5611.38063 Doing local rearrangements Tested 24 alternative trees arabidopsi Tested 27 alternative trees Ln Likelihood = -5928.24957 Doing local rearrangements Tested 26 alternative trees bryopsis-- Tested 29 alternative trees Ln Likelihood = -6157.01236 Doing local rearrangements Tested 28 alternative trees Ln Likelihood = -6155.17964 Tested 28 alternative trees Ln Likelihood = -6155.12166 Tested 28 alternative trees Ln Likelihood = -6154.48950 Tested 28 alternative trees nico-syl-A Tested 31 alternative trees Ln Likelihood = -6154.49044 Doing local rearrangements Tested 30 alternative trees ochromonas Tested 33 alternative trees Ln Likelihood = -6450.06100 Doing local rearrangements Tested 32 alternative trees gracilaria Tested 35 alternative trees Ln Likelihood = -6650.92032 Doing local rearrangements Tested 34 alternative trees Ln Likelihood = -6650.56906 Tested 34 alternative trees cyclotella Tested 37 alternative trees Ln Likelihood = -6985.38766 Doing local rearrangements Tested 36 alternative trees chlorella- Tested 39 alternative trees Ln Likelihood = -7108.67531 Doing local rearrangements Tested 38 alternative trees Ln Likelihood = -7108.41827 Tested 38 alternative trees deinonema- Tested 41 alternative trees Ln Likelihood = -7427.42745 Doing local rearrangements Tested 40 alternative trees Ln Likelihood = -7426.88501 Tested 40 alternative trees Taquaticus Tested 43 alternative trees Ln Likelihood = -7546.65243 Doing local rearrangements Tested 42 alternative trees chlamydomo Tested 45 alternative trees Ln Likelihood = -7779.34881 Doing local rearrangements Tested 44 alternative trees cyanophora Tested 47 alternative trees Ln Likelihood = -7989.41114 Doing local rearrangements Tested 46 alternative trees Ln Likelihood = -7984.14171 Tested 46 alternative trees Ln Likelihood = -7978.23629 Tested 46 alternative trees Ln Likelihood = -7970.77089 Tested 46 alternative trees Ln Likelihood = -7969.95012 Tested 46 alternative trees Ln Likelihood = -7969.34648 Tested 46 alternative trees Ln Likelihood = -7969.16602 Tested 46 alternative trees Ln Likelihood = -7963.19945 Tested 46 alternative trees astasia--- Tested 49 alternative trees Ln Likelihood = -8187.90578 Doing local rearrangements Tested 48 alternative trees smithora-- Tested 51 alternative trees Ln Likelihood = -8250.39124 Doing local rearrangements Tested 50 alternative trees Ln Likelihood = -8241.75512 Tested 50 alternative trees euglena--- Tested 53 alternative trees Ln Likelihood = -8565.87671 Doing local rearrangements Tested 52 alternative trees Ln Likelihood = -8563.36981 Tested 52 alternative trees Ln Likelihood = -8560.19634 Tested 52 alternative trees Ln Likelihood = -8555.90470 Tested 52 alternative trees Ln Likelihood = -8551.93363 Tested 52 alternative trees Ln Likelihood = -8547.90156 Tested 52 alternative trees Ln Likelihood = -8542.40502 Tested 52 alternative trees Ln Likelihood = -8540.42947 Tested 52 alternative trees Ln Likelihood = -8536.65208 Tested 52 alternative trees shewanella Tested 55 alternative trees Ln Likelihood = -8786.34429 Doing local rearrangements Tested 54 alternative trees laminaria- Tested 57 alternative trees Ln Likelihood = -8996.50275 Doing local rearrangements Tested 56 alternative trees Ln Likelihood = -8995.65715 Tested 56 alternative trees micrococcu Tested 59 alternative trees Ln Likelihood = -9512.74310 Doing local rearrangements Tested 58 alternative trees ChlamydiaB Tested 61 alternative trees Ln Likelihood = -10109.89384 Doing local rearrangements Tested 60 alternative trees borrelia-b Tested 63 alternative trees Ln Likelihood = -10677.38214 Doing local rearrangements Tested 62 alternative trees Ln Likelihood = -10677.28757 Tested 62 alternative trees Ln Likelihood = -10673.80985 Tested 62 alternative trees Ln Likelihood = -10672.85941 Tested 62 alternative trees glycine--- Tested 65 alternative trees Ln Likelihood = -10886.22819 Doing local rearrangements Tested 64 alternative trees myco-gentl Tested 67 alternative trees Ln Likelihood = -11387.28399 Doing local rearrangements Tested 66 alternative trees odontella- Tested 69 alternative trees Ln Likelihood = -11522.84549 Doing local rearrangements Tested 68 alternative trees Ln Likelihood = -11517.10548 Tested 68 alternative trees derbesia-- Tested 71 alternative trees Ln Likelihood = -11771.64343 Doing local rearrangements Tested 70 alternative trees Ln Likelihood = -11771.01909 Tested 70 alternative trees bacteroide Tested 73 alternative trees Ln Likelihood = -12187.91514 Doing local rearrangements Tested 72 alternative trees Ln Likelihood = -12184.93725 Tested 72 alternative trees Ln Likelihood = -12180.99936 Tested 72 alternative trees Ln Likelihood = -12174.13756 Tested 72 alternative trees Ln Likelihood = -12171.98097 Tested 72 alternative trees Ln Likelihood = -12167.10983 Tested 72 alternative trees porphyridi Tested 75 alternative trees Ln Likelihood = -12351.13563 Doing local rearrangements Tested 74 alternative trees Ln Likelihood = -12350.89012 Tested 74 alternative trees coleochaet Tested 77 alternative trees Ln Likelihood = -13056.44417 Doing local rearrangements Tested 76 alternative trees streptococ Tested 79 alternative trees Ln Likelihood = -13470.83077 Doing local rearrangements Tested 78 alternative trees Ln Likelihood = -13469.46833 Tested 78 alternative trees Ln Likelihood = -13462.28362 Tested 78 alternative trees Ln Likelihood = -13454.70043 Tested 78 alternative trees Ln Likelihood = -13445.99506 Tested 78 alternative trees Ln Likelihood = -13436.56260 Tested 78 alternative trees Ln Likelihood = -13436.21378 Tested 78 alternative trees spirulina- Tested 81 alternative trees Ln Likelihood = -13835.92159 Doing local rearrangements Tested 80 alternative trees Ln Likelihood = -13833.41806 Tested 80 alternative trees Ln Likelihood = -13828.50361 Tested 80 alternative trees Ln Likelihood = -13827.29908 Tested 80 alternative trees Ln Likelihood = -13827.15337 Tested 80 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