mpi56.cpt

fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memo

[&&fastDNAml: version = '1.2.2', likelihood = -16808.56507909, ntaxa = 56, opt_level = 1, smoothed = 1] (('shewanella': 0.042555,('ecoli-----': 0.000001,'salmonella': 0.004297): 0.035795): 0.027992,(('bacillus--': 0.074714,((('mantoniell': 0.071058,((((('cryptomona': 0.099235,'vaucheria-': 0.078233): 0.013584,('gracilaria': 0.084701,(('smithora--': 0.008429,'porphyra--': 0.038466): 0.033913,(('cyanophora': 0.061233,'ochromonas': 0.118973): 0.021173,('porphyridi': 0.064107,(('costaria--': 0.006862,'laminaria-': 0.011800): 0.063089,('cyclotella': 0.025290,('coscinodis': 0.027756,'odontella-': 0.041059): 0.012911): 0.031680): 0.032044): 0.028328): 0.016772): 0.011211): 0.018669): 0.020603,('raphidonem': 0.021328,('euglena---': 0.013492,'astasia---': 0.072241): 0.075305): 0.009096): 0.021471,(('chlorella-': 0.026078,('draparnald': 0.089441,('pandorina-': 0.013458,('chlamydomo': 0.000001,'gonium----': 0.010351): 0.028207): 0.014712): 0.021645): 0.021790,(('codium----': 0.121220,'derbesia--': 0.095050): 0.041350,'bryopsis--': 0.050867): 0.068604): 0.026821): 0.015748,(('coleochaet': 0.315720,('nitella---': 0.047105,'chara-----': 0.025039): 0.043344): 0.039583,('glycine---': 0.022467,('arabidopsi': 0.056376,('nico-syl-A': 0.000001,'nico-tabac': 0.000001): 0.043177): 0.018408): 0.118090): 0.041438): 0.000001): 0.011593,((('gloeothece': 0.047910,'anacystis-': 0.053740): 0.023718,('spirulina-': 0.087921,('gloeobacte': 0.102673,'plectonema': 0.086513): 0.018783): 0.009443): 0.008863,('prochlthx-': 0.077426,'phormidium': 0.066203): 0.017741): 0.011791): 0.081014,((('flexistips': 0.084263,'ChlamydiaB': 0.210568): 0.020928,('borrelia-b': 0.200352,'thermotoga': 0.105992): 0.049795): 0.061734,('deinonema-': 0.065778,('Taquaticus': 0.016779,'Tthermophi': 0.016038): 0.053342): 0.041901): 0.011882): 0.023341): 0.033123,((('mycobactrm': 0.039138,'micrococcu': 0.085168): 0.062803,'streptococ': 0.093058): 0.029703,('myco-gentl': 0.146308,'bacteroide': 0.092542): 0.032886): 0.016772): 0.024872,'pseudomona': 0.073411):0.0;