mpi_test.pbs

fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memo

#PBS -S /bin/csh
#
#PBS -N mpi56
#PBS -l nodes=6:ppn=2,cput=02:00:00
#PBS -q [e-mail]
#PBS -M dkberry
#PBS -m abe
#
#PBS -o /hpcscr/dkberry/fastDNAml_1.2.2p/testdata/mpi56.out
#PBS -e /hpcscr/dkberry/fastDNAml_1.2.2p/testdata/mpi56.mon

 cd $PBS_O_WORKDIR
 mkp4pg $PBS_NODEFILE 1 mpi_dnaml_mon $PBS_O_WORKDIR >$PBS_JOBNAME.pg

 /usr/local/mpich/bin/mpirun -p4pg $PBS_JOBNAME.pg mpi_dnaml_mon \
   -d4 -n$PBS_JOBNAME -s test56.phy