trees2nexus

fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memo

#! /bin/sh
#
# Convert one tree per line into PAUP (NEXUS) tree file
# Accepts input from named file(s) or standard input
#
echo "#NEXUS"
echo ""
echo "Begin Trees;"
if test $# -eq 0; then
   egrep -n "." | sed -e 's/:/ = /' -e 's/^/  utree /'
else
   i=0
   for file in $*; do
     i=`expr $i + 1`
     sed -e 's/^/  utree '"$i"' = /' $file
   done
fi
echo "Endblock;"