📄 fileiterator.java
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/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept. This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit). http://www.cs.umass.edu/~mccallum/mallet This software is provided under the terms of the Common Public License, version 1.0, as published by http://www.opensource.org. For further information, see the file `LICENSE' included with this distribution. *//** @author Andrew McCallum <a href="mailto:mccallum@cs.umass.edu">mccallum@cs.umass.edu</a> */package edu.umass.cs.mallet.base.pipe.iterator;import edu.umass.cs.mallet.base.pipe.Pipe;import edu.umass.cs.mallet.base.types.Label;import edu.umass.cs.mallet.base.types.Instance;import edu.umass.cs.mallet.base.types.Alphabet;import edu.umass.cs.mallet.base.util.Strings;import java.util.ArrayList;import java.util.Iterator;import java.net.URI;import java.util.regex.*;import java.io.*;/** * An iterator that generates instances from an initial * directory or set of directories. * Each filename becomes the data field of an instance, and the result of * a user-specified regular expression pattern applied to the filename becomes * the target value of the instance. * <p> * In document classification it is common that the file name in the data field * will be subsequently processed by one or more pipes until it contains a feature vector. * The pattern applied to the file name is often * used to extract a directory name * that will be used as the true label of the instance; this label is kept in the target * field. * * * @author Andrew McCallum <a href="mailto:mccallum@cs.umass.edu">mccallum@cs.umass.edu</a> */public class FileIterator extends AbstractPipeInputIterator{ FileFilter fileFilter; ArrayList fileArray; Iterator subIterator; Pattern targetPattern; // Set target slot to string coming from 1st group of this Pattern File[] startingDirectories; int[] minFileIndex; int fileCount; int commonPrefixIndex; /** Special value that means to use the directories[i].getPath() as the target name */ // xxx Note that these are specific to UNIX directory delimiter characters! Fix this. /** Use as label names the directories specified in the constructor, * optionally removing common prefix of all starting directories */ public static final Pattern STARTING_DIRECTORIES = Pattern.compile ("_STARTING_DIRECTORIES_"); /** Use as label names the first directory in the filename. */ public static final Pattern FIRST_DIRECTORY = Pattern.compile ("/?([^/]*)/.+"); /** Use as label name the last directory in the filename. */ public static final Pattern LAST_DIRECTORY = Pattern.compile(".*/([^/]+)/[^/]+"); // was ("([^/]*)/[^/]+"); /** Use as label names all the directory names in the filename. */ public static final Pattern ALL_DIRECTORIES = Pattern.compile ("^(.*)/[^/]+"); // added by Fuchun Peng public ArrayList getFileArray() { return fileArray; } /** * Construct a FileIterator that will supply filenames within initial directories * as instances * @param directories Array of directories to collect files from * @param fileFilter class implementing interface FileFilter that will decide which names to accept. * May be null. * @param targetPattern regex Pattern applied to the filename whose first parenthesized group * on matching is taken to be the target value of the generated instance. The pattern is applied to * the directory with the matcher.find() method. If null, then all instances * will have target null. * @param removeCommonPrefix boolean that modifies the behavior of the STARTING_DIRECTORIES pattern, * removing the common prefix of all initially specified directories, * leaving the remainder of each filename as the target value. * */ protected FileIterator(File[] directories, FileFilter fileFilter, Pattern targetPattern, boolean removeCommonPrefix) { this.startingDirectories = directories; this.fileFilter = fileFilter; this.minFileIndex = new int[directories.length]; this.fileArray = new ArrayList (); this.targetPattern = targetPattern; for (int i = 0; i < directories.length; i++) { if (!directories[i].isDirectory()) throw new IllegalArgumentException (directories[i].getAbsolutePath() + " is not a directory."); minFileIndex[i] = fileArray.size(); fillFileArray (directories[i], fileFilter, fileArray); } this.subIterator = fileArray.iterator(); this.fileCount = 0; String[] dirStrings = new String[directories.length]; for (int i = 0; i < directories.length; i++) dirStrings[i] = directories[i].toString(); if (removeCommonPrefix) this.commonPrefixIndex = Strings.commonPrefixIndex (dirStrings); //print the files // System.out.println("FileIterator fileArray"); // for(int i=0; i<fileArray.size(); i++){ // File file = (File) fileArray.get(i); // System.out.println(file.toString()); // } } public FileIterator (File[] directories, FileFilter fileFilter, Pattern targetPattern) { this (directories, fileFilter, targetPattern, false); } /** Iterate over Files that pass the fileFilter test, setting... */ public FileIterator (File[] directories, Pattern targetPattern) { this (directories, null, targetPattern); } public FileIterator (File[] directories, Pattern targetPattern, boolean removeCommonPrefix ) { this (directories, null, targetPattern, removeCommonPrefix); } public static File[] stringArray2FileArray (String[] sa) { File[] ret = new File[sa.length]; for (int i = 0; i < sa.length; i++) ret[i] = new File (sa[i]); return ret; } public FileIterator (String[] directories, FileFilter ff) { this (stringArray2FileArray(directories), ff, null); } public FileIterator (String[] directories, String targetPattern) { this (stringArray2FileArray(directories), Pattern.compile(targetPattern)); } public FileIterator (String[] directories, Pattern targetPattern) { this (stringArray2FileArray(directories), targetPattern); } public FileIterator (String[] directories, Pattern targetPattern, boolean removeCommonPrefix) { this (stringArray2FileArray(directories), targetPattern, removeCommonPrefix); } public FileIterator (File directory, FileFilter fileFilter, Pattern targetPattern) { this (new File[] {directory}, fileFilter, targetPattern); } public FileIterator (File directory, FileFilter fileFilter, Pattern targetPattern, boolean removeCommonPrefix) { this (new File[] {directory}, fileFilter, targetPattern, removeCommonPrefix); } public FileIterator (File directory, FileFilter fileFilter) { this (new File[] {directory}, fileFilter, null); } public FileIterator (File directory, Pattern targetPattern) { this (new File[] {directory}, null, targetPattern); } public FileIterator (File directory, Pattern targetPattern, boolean removeCommonPrefix) { this (new File[] {directory}, null, targetPattern, removeCommonPrefix); } public FileIterator (String directory, Pattern targetPattern) { this (new File[] {new File(directory)}, null, targetPattern); } public FileIterator (String directory, Pattern targetPattern, boolean removeCommonPrefix) { this (new File[] {new File(directory)}, null, targetPattern, removeCommonPrefix); } public FileIterator (File directory) { this (new File[] {directory}, null, null, false); } public FileIterator (String directory) { this (new File[] {new File(directory)}, null, null, false); } public FileIterator (String directory, FileFilter filter) { this (new File[] {new File(directory) }, filter, null); } private int fillFileArray (File directory, FileFilter filter, ArrayList files) { int count = 0; File[] directoryContents = directory.listFiles(); for (int i = 0; i < directoryContents.length; i++) { if (directoryContents[i].isDirectory()) count += fillFileArray (directoryContents[i], filter, files); else if (filter == null || filter.accept(directoryContents[i])) { files.add (directoryContents[i]); count++; } } return count; } // The PipeInputIterator interface public Instance nextInstance () { File nextFile = (File) subIterator.next(); String path = nextFile.getAbsolutePath(); String targetName = null; if (targetPattern == STARTING_DIRECTORIES) { int i; for (i = 0; i < minFileIndex.length; i++) if (minFileIndex[i] > fileCount) break; targetName = startingDirectories[--i].getPath().substring(commonPrefixIndex); } else if (targetPattern != null) { Matcher m = targetPattern.matcher(path); if (m.find ()){ targetName = m.group (1); } } fileCount++; return new Instance (nextFile, targetName, nextFile.toURI(), null); } // culotta - 9.11.03 public File nextFile () { return (File) subIterator.next(); } public boolean hasNext () { return subIterator.hasNext(); } }
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