makefile

一个神经网络工具箱

cont.o:       cont.c cont.h phylip.h
	$(CC) -c cont.c

moves.o:   moves.c phylip.h moves.h
	$(CC) -c moves.c

#
# compile the individual programs
#

clique.o:       clique.c disc.h phylip.h
	$(CC) -c clique.c

clique:       clique.o clique.c disc.o disc.c phylip.o phylip.c disc.h phylip.h
	$(CC) clique.o disc.o phylip.o $(LIBS) -o clique

cons.o:          cons.c cons.h phylip.h 
	$(CC) -c cons.c

consense.o:     consense.c cons.h phylip.h
	$(CC) -c consense.c

consense:     consense.o consense.c phylip.o phylip.c cons.o cons.c cons.h phylip.h
	$(CC) consense.o cons.o phylip.o $(LIBS) -o consense

contml.o:       contml.c cont.h phylip.h
	$(CC) -c contml.c

contml:       contml.o contml.c cont.o cont.c phylip.o phylip.c cont.h phylip.h
	$(CC) contml.o cont.o phylip.o $(LIBS) -o contml

contrast.o:       contrast.c cont.h phylip.h
	$(CC) -c contrast.c

contrast:       contrast.o contrast.c cont.o cont.c phylip.o phylip.c cont.h phylip.h
	$(CC) contrast.o cont.o phylip.o $(LIBS) -o contrast

dnacomp.o:      dnacomp.c seq.h phylip.h
	$(CC) -c dnacomp.c

dnacomp:      dnacomp.o seq.o phylip.o dnacomp.c seq.c phylip.c seq.h phylip.h
	$(CC) dnacomp.o seq.o phylip.o $(LIBS) -o dnacomp

dnadist.o:      dnadist.c seq.h phylip.h
	$(CC) -c dnadist.c

dnadist:      dnadist.o seq.o phylip.o dnadist.c seq.c phylip.c seq.h phylip.h
	$(CC) dnadist.o seq.o phylip.o $(LIBS) -o dnadist

dnainvar.o:      dnainvar.c seq.h phylip.h
	$(CC) -c dnainvar.c

dnainvar:      dnainvar.o seq.o phylip.o dnainvar.c seq.c phylip.c seq.h phylip.h
	$(CC) dnainvar.o seq.o phylip.o $(LIBS) -o dnainvar

dnaml.o:      dnaml.c seq.h phylip.h
	$(CC) -c dnaml.c

dnaml:      dnaml.o seq.o phylip.o dnaml.c seq.c phylip.c seq.h phylip.h
	$(CC) dnaml.o seq.o phylip.o $(LIBS) -o dnaml

dnamlk.o:      dnamlk.c seq.h phylip.h
	$(CC) -c dnamlk.c

dnamlk:      dnamlk.o seq.o phylip.o dnamlk.c seq.c phylip.c
	$(CC) dnamlk.o seq.o phylip.o $(LIBS) -o dnamlk

dnamove.o:      dnamove.c seq.h moves.h phylip.h
	$(CC) -c dnamove.c

dnamove:      dnamove.o seq.o moves.o phylip.o dnamove.c seq.c phylip.c seq.h phylip.h
	$(CC) dnamove.o seq.o moves.o phylip.o $(LIBS) -o dnamove

dnapenny.o:      dnapenny.c seq.h phylip.h
	$(CC) -c dnapenny.c

dnapenny:      dnapenny.o seq.o phylip.o dnapenny.c seq.c phylip.c seq.h phylip.h
	$(CC) dnapenny.o seq.o phylip.o $(LIBS) -o dnapenny

dnapars.o:      dnapars.c seq.h phylip.h
	$(CC) -c dnapars.c

dnapars:      dnapars.o seq.o phylip.o dnapars.c seq.c phylip.c seq.h phylip.h
	$(CC) dnapars.o seq.o phylip.o $(LIBS) -o dnapars

dolmove.o:       dolmove.c disc.h moves.h dollo.h phylip.h
	$(CC) -c dolmove.c

dolmove:       dolmove.o disc.o moves.o dollo.o phylip.o dolmove.c disc.c moves.c dollo.c phylip.c disc.h moves.h dollo.h phylip.h
	$(CC) dolmove.o disc.o moves.o dollo.o phylip.o $(LIBS) -o dolmove

dollop.o:       dollop.c disc.h dollo.h phylip.h
	$(CC) -c dollop.c

dollop:       dollop.o disc.o dollo.o phylip.o dollop.c disc.c dollo.c phylip.c disc.h dollo.h phylip.h
	$(CC) dollop.o disc.o dollo.o phylip.o $(LIBS) -o dollop

dolpenny.o:       dolpenny.c disc.h dollo.h phylip.h
	$(CC) -c dolpenny.c

dolpenny:       dolpenny.o disc.o dollo.o phylip.o dolpenny.c disc.c dollo.c phylip.c disc.h dollo.h phylip.h
	$(CC) dolpenny.o disc.o dollo.o phylip.o $(LIBS) -o dolpenny

draw.o:   draw.c draw.h phylip.h 
	$(DC) -c draw.c

draw2.o:   draw2.c draw.h phylip.h 
	$(DC) -c draw2.c

drawgram.o:     drawgram.c draw.h phylip.h
	$(DC) -c drawgram.c

drawgram:     drawgram.o draw.o draw2.o phylip.o drawgram.c draw.c draw2.c draw.h phylip.h
	$(DC) $(DLIBS) draw.o draw2.o drawgram.o phylip.o $(LIBS) -o drawgram

drawtree.o:     drawtree.c draw.h phylip.h
	$(DC) -c drawtree.c

drawtree:     drawtree.o draw.o draw2.o phylip.o drawtree.c draw.c draw2.c draw.h phylip.h
	$(DC) $(DLIBS) draw.o draw2.o drawtree.o phylip.o $(LIBS) -o drawtree

factor.o:       factor.c phylip.h
	$(CC) -c factor.c

factor:       factor.o phylip.o factor.c phylip.c phylip.h
	$(CC) factor.o phylip.o $(LIBS) -o factor

fitch.o:        fitch.c dist.h phylip.h
	$(CC) -c fitch.c

fitch:        fitch.o dist.o phylip.o fitch.c dist.c phylip.c dist.h phylip.h
	$(CC) fitch.o dist.o phylip.o $(LIBS) -o fitch

gendist.o:      gendist.c phylip.h
	$(CC) -c gendist.c

gendist:      gendist.o phylip.o gendist.c phylip.c phylip.h
	$(CC) gendist.o phylip.o $(LIBS) -o gendist

kitsch.o:        kitsch.c dist.h phylip.h
	$(CC) -c kitsch.c

kitsch:        kitsch.o dist.o phylip.o kitsch.c dist.c phylip.c dist.h phylip.h
	$(CC) kitsch.o dist.o phylip.o $(LIBS) -o kitsch

mix.o:        mix.c disc.h wagner.h phylip.h
	$(CC) -c mix.c

mix:        mix.o disc.o wagner.o phylip.o mix.c disc.c wagner.c phylip.c disc.h wagner.h phylip.h
	$(CC) mix.o disc.o wagner.o phylip.o $(LIBS) -o mix

move.o:        move.c disc.h moves.h wagner.h phylip.h
	$(CC) -c move.c

move:        move.o disc.o moves.o wagner.o phylip.o move.c disc.c moves.c wagner.c phylip.c disc.h moves.h wagner.h phylip.h
	$(CC) move.o disc.o moves.o wagner.o phylip.o $(LIBS) -o move

neighbor.o:        neighbor.c dist.h phylip.h
	$(CC) -c neighbor.c

neighbor:        neighbor.o dist.o phylip.o neighbor.c dist.c phylip.c dist.h phylip.h
	$(CC) neighbor.o dist.o phylip.o $(LIBS) -o neighbor

pars.o:   pars.c discrete.h phylip.h
	$(CC) -c pars.c

pars: pars.o pars.c discrete.o discrete.c phylip.o phylip.c discrete.h phylip.h
	$(CC) pars.o discrete.o phylip.o $(LIBS) -o pars

penny.o:  penny.c disc.h wagner.h phylip.h
	$(CC) -c penny.c

penny:  penny.o disc.o wagner.o phylip.o penny.c disc.c wagner.c disc.h wagner.h phylip.h
	$(CC) penny.o disc.o wagner.o  phylip.o $(LIBS) -o penny

proml.o:      proml.c seq.h phylip.h
	$(CC) -c proml.c

proml:      proml.o seq.o phylip.o proml.c seq.c phylip.c seq.h phylip.h
	$(CC) proml.o seq.o phylip.o $(LIBS) -o proml

promlk.o:      promlk.c seq.h phylip.h
	$(CC) -c promlk.c

promlk:      promlk.o seq.o phylip.o promlk.c seq.c phylip.c
	$(CC) promlk.o seq.o phylip.o $(LIBS) -o promlk

protdist.o:      protdist.c seq.h phylip.h
	$(CC) -c protdist.c

protdist:      protdist.o seq.o phylip.o protdist.c seq.c phylip.c seq.h phylip.h
	$(CC) protdist.o seq.o phylip.o $(LIBS) -o protdist

protpars.o: protpars.c seq.h phylip.h
	$(CC) -c protpars.c

protpars: protpars.o seq.o phylip.o protpars.c seq.c phylip.c seq.h phylip.h
	$(CC) protpars.o seq.o phylip.o $(LIBS) -o protpars

restdist.o: restdist.c seq.h phylip.h
	 $(CC) -c restdist.c

restdist: restdist.o seq.o phylip.o restdist.c seq.c phylip.c seq.h phylip.h
	$(CC) restdist.o seq.o phylip.o $(LIBS) -o restdist

restml.o: restml.c seq.h phylip.h
	 $(CC) -c restml.c

restml: restml.o seq.o phylip.o restml.c seq.c phylip.c seq.h phylip.h
	$(CC) restml.o seq.o phylip.o $(LIBS) -o restml

retree.o:       retree.c moves.h phylip.h
	$(CC) -c retree.c

retree:       retree.o moves.o phylip.o retree.c moves.c phylip.c moves.h phylip.h
	$(CC) retree.o moves.o phylip.o $(LIBS) -o retree

seqboot.o:      seqboot.c phylip.h
	$(CC) -c seqboot.c

seqboot:      seqboot.o seq.o phylip.o seqboot.c seq.c phylip.c seq.h phylip.h
	$(CC) seqboot.o seq.o phylip.o $(LIBS) -o seqboot

treedist.o:     treedist.c cons.h phylip.h
	$(CC) -c treedist.c

treedist:     treedist.o phylip.o cons.o
	$(CC) treedist.o cons.o phylip.o $(LIBS) -o treedist