elec_emse2matlab.m

Matlab下的EEG处理程序库

function elp = elec_emse2matlab(filename)

% ELEC_EMSE2MATLAB - Read an EMSE probe file (*.elp)
% 
% Useage: elp = elec_emse2matlab(filename)
% 
% This script extracts x,y,z values from an EMSE 
% probe (*.elp) file, only if it contains EEG
% electrodes.
% 
% EMSE *.elp files are in meters.  Also, when using
% EMSE *.elp files in the eeg_toolbox, it is necessary
% to swap X and Y.  This is handled by elec_open
% 
% An example of the elp struct returned follows:
% 
%        version: 3
%       filetype: 2
%      minor_rev: 1
%     sensorType: 4001
%        sensorN: 125
%         nasion: [0.0957 0 0]
%            lpa: [-7.1503e-004 0.0804 0]
%            rpa: [7.1503e-004 -0.0804 0]
%              x: [124x1 double]
%              y: [124x1 double]
%              z: [124x1 double]
%            ref: [0.0089 -0.0732 -0.0214]
%         origin: [-0.0083 0.0043 0.0496]
%           type: {124x1 cell}
%           name: {124x1 cell}
%
% See also: ELEC_OPEN, ELEC_LOAD
% 

% $Revision: 1.2 $ $Date: 2003/03/02 03:20:44 $

% Licence:  GNU GPL, no express or implied warranties
% History:  10/2002, [e-mail]
% 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

[path,name,ext] = fileparts(filename);
file = fullfile(path,[name ext]);

[fid,msg] = fopen(file,'r');
if ~isempty(msg), error(msg); end

tic

fprintf('\nELEC_EMSE2MATLAB...\n');
fprintf('...reading .elp data.\n');

elp = read_elp(fid);

t = toc; fprintf('done (%6.2f sec).\n',t);

return


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [elp] = read_elp(fid)
    
    elp = [];
    
    % Probe files contain position information for electrode locations 
    % and/or gradiometer locations. The file consists of a prolog, a 
    % header, and a list of one or more sensor fields.
    
    % Any line beginning with '//' is a comment line, which is ignored
    
    % Read the prolog
    tmp = fscanf(fid,'%d',3);
    elp.version = tmp(1);
    elp.filetype = tmp(2); % type 2 is a probe file, extension .elp
    elp.minor_rev = tmp(3); % usually 1
    
    % Read the header
    % The header consists of one optional entry and 2 entries in 
    % mandatory sequence and one optional entry:
    % Name [optional] > %N %s replace %s with name string (8 or fewer characters)
    % Type Code       > %x    replace %x with 1 (all electric), 2 (all magnetic) or 4 (mixed).
    % #Channels       > %d    number of points per channel per epoch
    
    % Sensor state (which appears in the 'type code' field) may 
    % be obtained by logically OR-ing suitable combinations from 
    % Table A-3. Note that not all combinations are physically valid.
    %
    % type/state        type code 
    % magnetic          200
    % electric          400
    % off               800
    % reference         1000
    % optical           4000
    % trigger           8000
    % other             10000
    % named point       20000
    
    % Other types (such as named points, trigger, and optical) should 
    % be represented in the same pattern as electrodes, with the type 
    % code set to identify the type. Even those types (e.g. trigger) 
    % which do not have a true location, should have a nominal 
    % location, (e.g. 0 0 0).
    
    while 1,
        tmp = fgetl(fid); % This should be: //TypeCode	nsensors
        if strmatch('//TypeCode',tmp),
            tmp = fscanf(fid,'%d',2);
            elp.sensorType = tmp(1);
            elp.sensorN = tmp(2);
            break;
        end
    end
    
    % Fiducial points may be included optionally. They are required 
    % for MRI registration. If they are included, they must be in 
    % the obligatory order : nasion, left preauricular point, 
    % right preauricular point. Table A-2 defines the format for 
    % representing fiduciary points.
    
    n = 0;
    while n <= 2,
        n = n + 1;
        tmp = fgetl(fid); % This should be: //Fiducials:  Nasion  Left  Right
        if strmatch('//Fiducials',tmp),
            tmp = fgetl(fid);
            tmp = sscanf(tmp,'%2c %f %f %f');
            elp.nasion = [tmp(3) tmp(4) tmp(5)];
            tmp = fgetl(fid);
            tmp = sscanf(tmp,'%2c %f %f %f');
            elp.lpa    = [tmp(3) tmp(4) tmp(5)];
            tmp = fgetl(fid);
            tmp = sscanf(tmp,'%2c %f %f %f');
            elp.rpa    = [tmp(3) tmp(4) tmp(5)];
            break;
        end
    end
    
    elp.x = zeros(elp.sensorN - 1,1);
    elp.y = zeros(elp.sensorN - 1,1);
    elp.z = zeros(elp.sensorN - 1,1);
    elp.ref = [];
    elp.origin = [];
    
    n = 1;
    while n <= elp.sensorN,
        
        tmp = fgetl(fid);
        if ~ischar(tmp),
            break;
        elseif strmatch('//',tmp);
            % Ignore the comment lines, get the next one
            tmp = fgetl(fid);
        end
        
        % Each electrode is represented by an electric sensor, 
        % and consists of 5 fields, of which 1 (the name) is 
        % optional. The electric sensor field data is shown 
        % in Table A-6.
        % Name              Format      Description 
        % Type Code         %S          %x replace %x with 400 (electrode) or 1c00 if reference channel
        % Name [optional]   %N          %s replace %s with name string (8 or fewer characters)
        % Position          %g %g %g    electrode location with respect to head frame (Cartesian, meters)
        % Orientation       %g %g %g    not used, replace with 0 0 1
        
        if strmatch('%S',tmp),
            
            if findstr('c00',tmp),
                ref = 1; % A reference sensor
            else
                ref = 0;
                %tmp = sscanf(tmp,'%2c %d');
                elp.type{n,1} = tmp(4:end);
            end
            
            tmp = fgetl(fid);
            if strmatch('//',tmp);
                % Ignore the comment lines, get the next one
                tmp = fgetl(fid);
            end
            
            tmp = deblank(tmp);
            if strmatch('%N',tmp),
                
                % Read the name of the sensor
                tmp = strrep(tmp,'%N','');
                tmp = fliplr(deblank(fliplr(tmp)));
                if ~ref, elp.name{n,1} = tmp; end
                
                % Read the location XYZ
                tmp = fgetl(fid);
                if strmatch('//',tmp);
                    % Ignore comments, get the next line
                    tmp = fgetl(fid);
                end
                
                if strmatch('%O',tmp),
                    if isempty(elp.origin),
                        % Get the sphere origin
                        elp.origin = sscanf(tmp(3:end),'%f',3)';
                    end
                    tmp = fgetl(fid);
                    tmp = fgetl(fid);
                    % Read the xyz location
                    tmp = sscanf(tmp,'%f',3);
                    if ref,
                        elp.ref = tmp';
                    else
                        elp.x(n) = tmp(1);
                        elp.y(n) = tmp(2);
                        elp.z(n) = tmp(3);
                        n = n + 1;
                    end
                    % Skip the next line (empty)
                    tmp = fgetl(fid);
                else
                    tmp = sscanf(tmp,'%f',3);
                    if ref,
                        elp.ref = tmp';
                    else
                        elp.x(n) = tmp(1);
                        elp.y(n) = tmp(2);
                        elp.z(n) = tmp(3);
                        n = n + 1;
                    end
                end
            end
        end
    end
    
    fclose(fid);
    
return




%#####################################################
%# Declarations
%
%@miss = ("LEFT", "VEOGR", "HEOG", "NA1");
%
%@landmarks = ("Nasion", "Left", "Right", "Centroid", "Ref");
%
%#####################################################
%# Output to STDOUT

%@d = split(/\s+/, $dat{"Nasion"});
%$name = "Nasion";
%$code = 110;
%printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$name,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);

%@d = split(/\s+/, $dat{"Left"});
%$name = "Left";
%$code = 108;
%printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$name,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);

%@d = split(/\s+/, $dat{"Right"});
%$name = "Right";
%$code = 114;
%printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$name,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);

%foreach $k ( sort {$a<=>$b} keys (%dat) ){

%  $pr = "yes";

%  # Skip various points defined above in @miss and @landmarks
%  foreach $m (@miss, @landmarks) {
%    if ($k =~ /$m/i) { $pr = "no"; }
%  }

%  # otherwise, print ordered list of points
%  if($pr eq "yes"){

%      #Output normal electrode positions

%      @d = split(/\s+/, $dat{$k});
%      $code = 69;
%      printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$k,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);


%#Output centroid and ref points

%@d = split(/\s+/, $dat{"Centroid"});
%$name = "Centroid";
%$code = 99;
%printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$name,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);

%@d = split(/\s+/, $dat{"Ref"});
%$name = "Ref";
%$code = 120;
%printf "%10s\t%d\t%12.6f\t%12.6f\t%12.6f\n",$name,$code,($d[2] * -100),($d[1] * 100),($d[3] * 100);