📄 fe_var6
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# fe variables## file to be read by commander.p# each line is turned into a structure entry (str)# a default-setting entry (def)# a usage-printing entry (usg)# and a command line reading entry (clr)# of these, the S, U and C can be disabled by >No S, etc.# and the D can be disabled by -.## variable type deflt flag short_name extra_action long_name#c->gamma d -1 -gamma gamma - Power that modifies E_L to discourage violations if set to 0,1,2>No CUc->dgamma f - - - - (double) (gamma)> CUc->metric d 1 -metric m(0/1) - Whether to include the q(1-q) factor in the gradientc->writelog d 0 -log l - write every value of x at which function is evaluated. First l components.c->logfile s - -logfile file - file for log>No Sc->macarg.stepmax f 0.1 -o5smax step - max step size, optimizer 6 (not 5)>Sc->second d 0 -second 0/1 - whether to use 2nd backup strategyc->third d 0 -third 0/1 - whether to use a third# if there are multiple runs with different settings, some things # stay the same:>No CUc->init_given d 0 - - - whether an initial condition has been given in the accompanying fe_min_param>CUc->sdx f 0 -sdx sdx - initial standard deviationc->verbose d 0 -fv fv - - c->seqverbose d 0 -sv sv - - c->CG d 0 -fcg cg - check gradientc->outappend d 1 -oappend (0/1) - whether to append to the outfile; if this is zero, then it is overwritten every time insteadc->outfile s - -o outfile if(!(c->printout))c->printout=1; write reports to this file>No CUc->printout d 0 - - - ->CU# added feb 96c->totoutfile s - -to totoutfile if(!(c->printtot))c->printtot=1; write totals to filec->histofile s - -ho histofile if(!(c->printhisto))c->printhisto=1; histogram of stop times>No CUc->printtot d 0 - - - -c->printhisto d 0 - - - ->CUc->seed ld 135 -fseed fseed - used for randomization of the initial condition of the optimizationc->epsilon f 0.0001 -e epsilon - for cgc->DEMO d 0 -fdemo demo - - c->NORDER d 0 -norder norder - (for seqopt - 0/1/2 = 1..N / random / suspicion )c->betap f 1.0 -betap betap - prior's beta# and some things change>No CUc->beta0 f 1.0 - - - - c->beta1 f 1.0 - - - - c->betastyle d 0 - - - - - >CU >PU DNT; printf(" if annealing is used then ");>PU DNT; printf(" beta goes from beta0 to beta1 by uniform steps ");>PU DNT; printf(" either arithmetic or geometric");>No CUc->betaf f 1.0 - - - - c->nl d 0 - - - - >CUc->NL d 1 -nl loops - Number of loops. (annealing happens within these)c->rich d 0 -rich rich - - c->opt d 3 -opt opt - seq_opt is 3 ; no other supported? (0=frp,1=macopt,2=jumpopt,3=seqopt,4=?,5=strangeopt,6=creepy)>No CUc->iter d 0 - - - ->CUc->itmax d 100 -itmax itmax - num of linmins or jumps per optimizationc->ftol f 0.0001 -ftol ftol - - c->flintol f 0.001 -flintol flintol - -c->seq_period d 10 -seqp seqp - how frequently the free energy is evaluated to decide whether to stop the sequential optimizer >No CUc->zero_temperature d 0 - - - whether we are at zero temperature, in which case, the entropy and prior are ignored, and only the likelihood term is evaluatedc->mega_needed d 0 - - whether mega probability structure created>CU
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