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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;BIF reader<br>  Reads a graph description in XMLBIF03 from a string</TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1"><CODE>&nbsp;void</CODE></FONT></TD><TD><CODE><B><A HREF="../../../weka/gui/graphvisualizer/GraphVisualizer.html#readDOT(java.io.Reader)">readDOT</A></B>(java.io.Reader&nbsp;input)</CODE><BR>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Dot reader<br>  Reads a graph description in DOT format from a string</TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_javax.swing.JPanel"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TD><B>Methods inherited from class javax.swing.JPanel</B></TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>getAccessibleContext, getUI, getUIClassID, setUI, updateUI</CODE></TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_javax.swing.JComponent"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TD><B>Methods inherited from class javax.swing.JComponent</B></TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update</CODE></TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_java.awt.Container"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TD><B>Methods inherited from class java.awt.Container</B></TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate</CODE></TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_java.awt.Component"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TD><B>Methods inherited from class java.awt.Component</B></TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle</CODE></TD></TR></TABLE>&nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor"><TD><B>Methods inherited from class java.lang.Object</B></TD></TR><TR BGCOLOR="white" CLASS="TableRowColor"><TD><CODE>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</CODE></TD></TR></TABLE>&nbsp;<P><!-- ============ FIELD DETAIL =========== --><!-- ========= CONSTRUCTOR DETAIL ======== --><A NAME="constructor_detail"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TD COLSPAN=1><FONT SIZE="+2"><B>Constructor Detail</B></FONT></TD></TR></TABLE><A NAME="GraphVisualizer()"><!-- --></A><H3>GraphVisualizer</H3><PRE>public <B>GraphVisualizer</B>()</PRE><DL><DD>Constructor<br> Sets up the gui and initializes all the other previously uninitialized variables.<P></DL><!-- ============ METHOD DETAIL ========== --><A NAME="method_detail"><!-- --></A><TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY=""><TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor"><TD COLSPAN=1><FONT SIZE="+2"><B>Method Detail</B></FONT></TD></TR></TABLE><A NAME="layoutCompleted(weka.gui.graphvisualizer.LayoutCompleteEvent)"><!-- --></A><H3>layoutCompleted</H3><PRE>public void <B>layoutCompleted</B>(<A HREF="../../../weka/gui/graphvisualizer/LayoutCompleteEvent.html" title="class in weka.gui.graphvisualizer">LayoutCompleteEvent</A>&nbsp;le)</PRE><DL><DD>This method is an implementation for LayoutCompleteEventListener class. It sets the size appropriate for m_gp GraphPanel and and revalidates it's container JScrollPane once a LayoutCompleteEvent is received from the LayoutEngine.<P><DD><DL><DT><B>Specified by:</B><DD><CODE><A HREF="../../../weka/gui/graphvisualizer/LayoutCompleteEventListener.html#layoutCompleted(weka.gui.graphvisualizer.LayoutCompleteEvent)">layoutCompleted</A></CODE> in interface <CODE><A HREF="../../../weka/gui/graphvisualizer/LayoutCompleteEventListener.html" title="interface in weka.gui.graphvisualizer">LayoutCompleteEventListener</A></CODE></DL></DD><DD><DL></DL></DD></DL><HR><A NAME="layoutGraph()"><!-- --></A><H3>layoutGraph</H3><PRE>public void <B>layoutGraph</B>()</PRE><DL><DD>This method lays out the graph by calling the LayoutEngine's layoutGraph() method. This method should be called to display the graph nicely, unless the input XMLBIF03 already contains some layout information (ie the x,y positions of nodes.<P><DD><DL></DL></DD><DD><DL></DL></DD></DL><HR><A NAME="readBIF(java.lang.String)"><!-- --></A><H3>readBIF</H3><PRE>public void <B>readBIF</B>(java.lang.String&nbsp;instring)             throws <A HREF="../../../weka/gui/graphvisualizer/BIFFormatException.html" title="class in weka.gui.graphvisualizer">BIFFormatException</A></PRE><DL><DD>BIF reader<br>  Reads a graph description in XMLBIF03 from a string<P><DD><DL></DL></DD><DD><DL><DT><B>Throws:</B><DD><CODE><A HREF="../../../weka/gui/graphvisualizer/BIFFormatException.html" title="class in weka.gui.graphvisualizer">BIFFormatException</A></CODE></DL></DD></DL><HR><A NAME="readBIF(java.io.InputStream)"><!-- --></A><H3>readBIF</H3><PRE>public void <B>readBIF</B>(java.io.InputStream&nbsp;instream)             throws <A HREF="../../../weka/gui/graphvisualizer/BIFFormatException.html" title="class in weka.gui.graphvisualizer">BIFFormatException</A></PRE><DL><DD>BIF reader<br>  Reads a graph description in XMLBIF03 from an InputStrem<P><DD><DL></DL></DD><DD><DL><DT><B>Throws:</B><DD><CODE><A HREF="../../../weka/gui/graphvisualizer/BIFFormatException.html" title="class in weka.gui.graphvisualizer">BIFFormatException</A></CODE></DL></DD></DL><HR><A NAME="readDOT(java.io.Reader)"><!-- --></A><H3>readDOT</H3><PRE>public void <B>readDOT</B>(java.io.Reader&nbsp;input)</PRE><DL><DD>Dot reader<br>  Reads a graph description in DOT format from a string<P><DD><DL></DL></DD><DD><DL></DL></DD></DL><HR><A NAME="main(java.lang.String[])"><!-- --></A><H3>main</H3><PRE>public static void <B>main</B>(java.lang.String[]&nbsp;args)</PRE><DL><DD>Main method to load a text file with the description of a graph from the command line<P><DD><DL></DL></DD><DD><DL></DL></DD></DL><!-- ========= END OF CLASS DATA ========= --><HR><!-- ======= START OF BOTTOM NAVBAR ====== --><A NAME="navbar_bottom"><!-- --></A><A HREF="#skip-navbar_bottom" title="Skip navigation links"></A><TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY=""><TR><TD COLSPAN=3 BGCOLOR="#EEEEFF" CLASS="NavBarCell1"><A NAME="navbar_bottom_firstrow"><!-- --></A><TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">  <TR ALIGN="center" VALIGN="top">  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-all.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>  <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../../Tutorial.pdf"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD> <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="http://www.cs.waikato.ac.nz/ml/weka/index.html"><FONT CLASS="NavBarFont1"><B>Weka's home</B></FONT></A>&nbsp;</TD>  </TR></TABLE></TD><TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM></EM></TD></TR><TR><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">&nbsp;<A HREF="../../../weka/gui/graphvisualizer/GraphNode.html" title="class in weka.gui.graphvisualizer"><B>PREV CLASS</B></A>&nbsp;&nbsp;<A HREF="../../../weka/gui/graphvisualizer/HierarchicalBCEngine.html" title="class in weka.gui.graphvisualizer"><B>NEXT CLASS</B></A></FONT></TD><TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">  <A HREF="../../../index.html" target="_top"><B>FRAMES</B></A>  &nbsp;&nbsp;<A HREF="GraphVisualizer.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;&nbsp;<SCRIPT type="text/javascript">  <!--  if(window==top) {    document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>'); 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