📄 runs.h
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// This is -*- C++ -*-// $Id: runs.h,v 1.5 1999/10/19 00:40:14 trow Exp $/* runs.cc * * Copyright (C) 1998, 1999 EMC Capital Management, Inc. * * Developed by Jon Trowbridge <trow@emccta.com>. * * This library is free software; you can redistribute it and/or * modify it under the terms of the GNU Library General Public * License as published by the Free Software Foundation; either * version 2 of the License, or (at your option) any later version. * * This library is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Library General Public License for more details. * * You should have received a copy of the GNU Library General Public * License along with this library; if not, write to the Free Software * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA * 02111-1307, USA. */#ifndef _INC_RUNS_H#define _INC_RUNS_H#include <ConfInt.h>#include "RealSet.h"// For a given sequence length N and probability p, returns an array of// length N-1 containing the exact pdf or cdf for the number of runs in// a set of N trials w/ probability p of success.double* runs_exact_pdf_array(unsigned N, double p);double* runs_exact_cdf_array(unsigned N, double p);// Returns the exact probability of <= k runs in N trials with probability p.double runs_exact_cdf(unsigned N, double p, unsigned k);// Returns the standard normal approximation of the probability of <= k// runs in N trials with probability p.double runs_approx_cdf(unsigned N, double p, unsigned k);class RunsCount {public: RunsCount() : size_(0), t_(0), f_(0), runs_(0) { } ///// void add(bool); void add(const RealSet& ds, bool (*d)(double)) { const double* dat = ds.data(); for(unsigned i=0; i<ds.size(); ++i) add(d(dat[i])); } template<class Decide> void add(const RealSet& ds, Decide d) { const double* dat = ds.data(); for(unsigned i=0; i<ds.size(); ++i) add(d(dat[i])); } void clear() { size_ = t_ = f_ = runs_ = 0; } ///// unsigned size() const { return size_; } unsigned obs(bool x) const { return x ? t_ : f_; } unsigned obs_true() const { return t_; } unsigned obs_false() const { return f_; } double prob_true() const { return t_/(double)size_; } double prob_false() const { return t_/(double)size_; } unsigned runs() const { return runs_; } double runs_mean() const; double runs_sdev() const; double z() const { double s = runs_sdev(); if (s <= 0.0) throw Exception("runs_sdev is not positive"); return (runs()-runs_mean())/s; } double p_approx() const; double p_exact() const;private: unsigned size_, t_, f_, runs_; bool last_;};class RunsUpDown {public: RunsUpDown() : size_(0), runs_(0), last_(0), constant_(true) { } ///// void add(double); void add(const RealSet& ds) { const double* dat = ds.data(); for(unsigned i=0; i<ds.size(); ++i) add(dat[i]); } void clear() { size_ = runs_ = 0; constant_ = true; } ///// unsigned size() const { return size_; } unsigned runs() const { return runs_; } double runs_mean() const; double runs_sdev() const; double z() const { double s = runs_sdev(); if (s <= 0.0) throw Exception("runs_sdev is not positive"); return (runs()-runs_mean())/s; } double p() const;private: unsigned size_, runs_; double last_; bool last_higher_, constant_;};#endif // _INC_RUNS_H// $Id: runs.h,v 1.5 1999/10/19 00:40:14 trow Exp $
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