coord_set.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: coord_set.hpp,v $
 * PRODUCTION Revision 1000.1  2004/04/12 17:32:17  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.12
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: coord_set.hpp,v 1000.1 2004/04/12 17:32:17 gouriano Exp $
* ===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Authors:  Paul Thiessen
*
* File Description:
*      Classes to hold sets of coordinates for atoms and features
*
* ===========================================================================
*/

#ifndef CN3D_COORDSET__HPP
#define CN3D_COORDSET__HPP

#include <corelib/ncbistl.hpp>

#include <map>

#include <objects/mmdb2/Biostruc_model.hpp>

#include "structure_base.hpp"


BEGIN_SCOPE(Cn3D)

class AtomSet;
class Object3D;

// a CoordSet contains one set of atomic coordinates, plus any accompanying
// feature (helix, strand, ...) coordinates - basically the contents of
// an ASN1 Biostruc-model

class CoordSet : public StructureBase
{
public:
    CoordSet(StructureBase *parent,
                const ncbi::objects::CBiostruc_model::TModel_coordinates& modelCoords);

    // atom coordinates
    AtomSet *atomSet;

    // map of moleculeID -> objects
    typedef std::list < const Object3D * > Object3DList;
    typedef std::map < int, Object3DList > Object3DMap;
    Object3DMap objectMap;

    // public methods
    bool Draw(const AtomSet *atomSet) const { return false; } // don't draw these directly

private:
};

END_SCOPE(Cn3D)

#endif // CN3D_COORDSET__HPP

/*
* ---------------------------------------------------------------------------
* $Log: coord_set.hpp,v $
* Revision 1000.1  2004/04/12 17:32:17  gouriano
* PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.12
*
* Revision 1.12  2004/02/19 17:04:55  thiessen
* remove cn3d/ from include paths; add pragma to disable annoying msvc warning
*
* Revision 1.11  2003/02/03 19:20:03  thiessen
* format changes: move CVS Log to bottom of file, remove std:: from .cpp files, and use new diagnostic macros
*
* Revision 1.10  2001/05/31 18:46:26  thiessen
* add preliminary style dialog; remove LIST_TYPE; add thread single and delete all; misc tweaks
*
* Revision 1.9  2000/11/30 15:49:08  thiessen
* add show/hide rows; unpack sec. struc. and domain features
*
* Revision 1.8  2000/10/04 17:40:45  thiessen
* rearrange STL #includes
*
* Revision 1.7  2000/08/27 18:50:55  thiessen
* extract sequence information
*
* Revision 1.6  2000/08/16 14:18:20  thiessen
* map 3-d objects to molecules
*
* Revision 1.5  2000/08/11 12:59:13  thiessen
* added worm; get 3d-object coords from asn1
*
* Revision 1.4  2000/08/03 15:12:29  thiessen
* add skeleton of style and show/hide managers
*
* Revision 1.3  2000/07/27 13:30:10  thiessen
* remove 'using namespace ...' from all headers
*
* Revision 1.2  2000/07/16 23:18:34  thiessen
* redo of drawing system
*
* Revision 1.1  2000/07/11 13:49:28  thiessen
* add modules to parse chemical graph; many improvements
*
*/