cdd_annot_dialog.cpp

ncbi源码

    }

    else if (rPMID->GetValue()) {
        DECLARE_AND_FIND_WINDOW_RETURN_FALSE_ON_ERR(tPMID, ID_T_PMID, wxTextCtrl)
        unsigned long pmid;
        if (tPMID->GetValue().ToULong(&pmid)) {
            evidence->SetReference().SetPmid().Set(pmid);
            return true;
        } else {
            ERRORMSG("CDDEvidenceDialog::GetData() - PMID must be a positive integer");
            return false;
        }
    }

    else if (rSTRUCTURE->GetValue()) {
        DECLARE_AND_FIND_WINDOW_RETURN_FALSE_ON_ERR(tSTRUCTURE, ID_T_STRUCTURE, wxTextCtrl)
        // either leave existing range alone, or use new one if none present or rerange button pressed
        if (!evidence->IsBsannot() || rerange) {
            CBiostruc_annot_set *ref =
                GlobalMessenger()->CreateBiostrucAnnotSetForHighlightsOnSingleObject();
            if (ref)
                evidence->SetBsannot(*ref);
            else
                return false;
        }
        // reset structure evidence tag
        CRef < CBiostruc_descr > descr(new CBiostruc_descr());
        descr->SetOther_comment(STRUCTURE_EVIDENCE_COMMENT);
        evidence->SetBsannot().SetDescr().clear();
        evidence->SetBsannot().SetDescr().push_front(descr);
        // reset name
        CRef < CBiostruc_feature_set_descr > name(new CBiostruc_feature_set_descr());
        name->SetName(tSTRUCTURE->GetValue().c_str());
        evidence->SetBsannot().SetFeatures().front()->SetDescr().clear();
        evidence->SetBsannot().SetFeatures().front()->SetDescr().push_front(name);
        return true;
    }

    ERRORMSG("CDDEvidenceDialog::GetData() - unknown evidence type");
    return false;
}

END_SCOPE(Cn3D)


////////////////////////////////////////////////////////////////////////////////////////////////
// The following is taken unmodified from wxDesigner's C++ code from cdd_annot_dialog.wdr
////////////////////////////////////////////////////////////////////////////////////////////////

wxSizer *SetupCDDAnnotDialog( wxPanel *parent, bool call_fit, bool set_sizer )
{
    wxBoxSizer *item0 = new wxBoxSizer( wxVERTICAL );

    wxFlexGridSizer *item1 = new wxFlexGridSizer( 1, 0, 0, 0 );

    wxStaticBox *item3 = new wxStaticBox( parent, -1, "Annotations" );
    wxStaticBoxSizer *item2 = new wxStaticBoxSizer( item3, wxVERTICAL );

    wxString *strs4 = (wxString*) NULL;
    wxListBox *item4 = new wxListBox( parent, ID_L_ANNOT, wxDefaultPosition, wxSize(200,100), 0, strs4, wxLB_SINGLE );
    item2->Add( item4, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    wxGridSizer *item5 = new wxGridSizer( 2, 0, 0, 0 );

    wxButton *item6 = new wxButton( parent, ID_B_NEW_ANNOT, "New", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item6, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item7 = new wxButton( parent, ID_B_HIGHLIGHT, "Highlight", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item7, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item8 = new wxButton( parent, ID_B_ANNOT_UP, "Move Up", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item8, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item9 = new wxButton( parent, ID_B_EDIT_ANNOT, "Edit", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item9, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item10 = new wxButton( parent, ID_B_DEL_ANNOT, "Delete", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item10, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item11 = new wxButton( parent, ID_B_ANNOT_DOWN, "Move Down", wxDefaultPosition, wxDefaultSize, 0 );
    item5->Add( item11, 0, wxALIGN_CENTRE|wxALL, 5 );

    item2->Add( item5, 0, wxALIGN_CENTRE|wxALL, 5 );

    item1->Add( item2, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxStaticBox *item13 = new wxStaticBox( parent, -1, "Evidence" );
    wxStaticBoxSizer *item12 = new wxStaticBoxSizer( item13, wxVERTICAL );

    wxString *strs14 = (wxString*) NULL;
    wxListBox *item14 = new wxListBox( parent, ID_L_EVID, wxDefaultPosition, wxSize(300,100), 0, strs14, wxLB_SINGLE );
    item12->Add( item14, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    wxGridSizer *item15 = new wxGridSizer( 2, 0, 0, 0 );

    wxButton *item16 = new wxButton( parent, ID_B_NEW_EVID, "New", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item16, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item17 = new wxButton( parent, ID_B_SHOW, "Show", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item17, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item18 = new wxButton( parent, ID_B_EVID_UP, "Move Up", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item18, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item19 = new wxButton( parent, ID_B_EDIT_EVID, "Edit", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item19, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item20 = new wxButton( parent, ID_B_DEL_EVID, "Delete", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item20, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item21 = new wxButton( parent, ID_B_EVID_DOWN, "Move Down", wxDefaultPosition, wxDefaultSize, 0 );
    item15->Add( item21, 0, wxALIGN_CENTRE|wxALL, 5 );

    item12->Add( item15, 0, wxALIGN_CENTRE|wxALL, 5 );

    item1->Add( item12, 0, wxALIGN_CENTRE|wxALL, 5 );

    item0->Add( item1, 0, wxALIGN_CENTRE, 5 );

    if (set_sizer)
    {
        parent->SetAutoLayout( TRUE );
        parent->SetSizer( item0 );
        if (call_fit)
        {
            item0->Fit( parent );
            item0->SetSizeHints( parent );
        }
    }

    return item0;
}

wxSizer *SetupEvidenceDialog( wxPanel *parent, bool call_fit, bool set_sizer )
{
    wxBoxSizer *item0 = new wxBoxSizer( wxVERTICAL );

    wxStaticBox *item2 = new wxStaticBox( parent, -1, "Evidence Options" );
    wxStaticBoxSizer *item1 = new wxStaticBoxSizer( item2, wxVERTICAL );

    wxFlexGridSizer *item3 = new wxFlexGridSizer( 1, 0, 0, 0 );
    item3->AddGrowableCol( 2 );

    wxRadioButton *item4 = new wxRadioButton( parent, ID_R_COMMENT, "", wxDefaultPosition, wxDefaultSize, 0 );
    item3->Add( item4, 0, wxALIGN_BOTTOM|wxALIGN_CENTER_HORIZONTAL|wxALL, 5 );

    wxStaticText *item5 = new wxStaticText( parent, ID_ST_COMMENT, "Comment:", wxDefaultPosition, wxDefaultSize, 0 );
    item3->Add( item5, 0, wxALIGN_CENTRE|wxRIGHT|wxTOP|wxBOTTOM, 5 );

    wxTextCtrl *item6 = new wxTextCtrl( parent, ID_T_COMMENT, "", wxDefaultPosition, wxSize(150,-1), 0 );
    item3->Add( item6, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    item1->Add( item3, 0, wxGROW|wxALIGN_CENTER_VERTICAL, 5 );

    wxStaticLine *item7 = new wxStaticLine( parent, ID_LINE, wxDefaultPosition, wxSize(20,-1), wxLI_HORIZONTAL );
    item1->Add( item7, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    wxFlexGridSizer *item8 = new wxFlexGridSizer( 1, 0, 0, 0 );
    item8->AddGrowableCol( 2 );

    wxRadioButton *item9 = new wxRadioButton( parent, ID_R_PMID, "", wxDefaultPosition, wxDefaultSize, 0 );
    item8->Add( item9, 0, wxALIGN_BOTTOM|wxALIGN_CENTER_HORIZONTAL|wxALL, 5 );

    wxStaticText *item10 = new wxStaticText( parent, ID_ST_PMID, "Reference (PubMed ID):", wxDefaultPosition, wxDefaultSize, 0 );
    item8->Add( item10, 0, wxALIGN_CENTRE|wxRIGHT|wxTOP|wxBOTTOM, 5 );

    wxTextCtrl *item11 = new wxTextCtrl( parent, ID_T_PMID, "", wxDefaultPosition, wxDefaultSize, 0 );
    item8->Add( item11, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    item1->Add( item8, 0, wxGROW|wxALIGN_CENTER_VERTICAL, 5 );

    wxStaticLine *item12 = new wxStaticLine( parent, ID_LINE, wxDefaultPosition, wxSize(20,-1), wxLI_HORIZONTAL );
    item1->Add( item12, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    wxFlexGridSizer *item13 = new wxFlexGridSizer( 1, 0, 0, 0 );
    item13->AddGrowableCol( 2 );

    wxRadioButton *item14 = new wxRadioButton( parent, ID_R_STRUCTURE, "", wxDefaultPosition, wxDefaultSize, 0 );
    item13->Add( item14, 0, wxALIGN_BOTTOM|wxALIGN_CENTER_HORIZONTAL|wxALL, 5 );

    wxStaticText *item15 = new wxStaticText( parent, ID_ST_STRUCTURE, "Structure:", wxDefaultPosition, wxDefaultSize, 0 );
    item13->Add( item15, 0, wxALIGN_CENTRE|wxRIGHT|wxTOP|wxBOTTOM, 5 );

    wxTextCtrl *item16 = new wxTextCtrl( parent, ID_T_STRUCTURE, "", wxDefaultPosition, wxSize(80,-1), 0 );
    item13->Add( item16, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    item1->Add( item13, 0, wxGROW|wxALIGN_CENTER_VERTICAL, 5 );

    wxButton *item17 = new wxButton( parent, ID_B_RERANGE, "Reset Residues to Current Highlights", wxDefaultPosition, wxDefaultSize, 0 );
    item1->Add( item17, 0, wxALIGN_CENTRE|wxALL, 5 );

    item0->Add( item1, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5 );

    wxFlexGridSizer *item18 = new wxFlexGridSizer( 1, 0, 0, 0 );

    wxButton *item19 = new wxButton( parent, ID_B_EDIT_OK, "OK", wxDefaultPosition, wxDefaultSize, 0 );
    item19->SetDefault();
    item18->Add( item19, 0, wxALIGN_CENTRE|wxALL, 5 );

    item18->Add( 20, 20, 0, wxALIGN_CENTRE|wxALL, 5 );

    wxButton *item20 = new wxButton( parent, ID_B_EDIT_CANCEL, "Cancel", wxDefaultPosition, wxDefaultSize, 0 );
    item18->Add( item20, 0, wxALIGN_CENTRE|wxALL, 5 );

    item0->Add( item18, 0, wxALIGN_CENTRE|wxALL, 5 );

    if (set_sizer)
    {
        parent->SetAutoLayout( TRUE );
        parent->SetSizer( item0 );
        if (call_fit)
        {
            item0->Fit( parent );
            item0->SetSizeHints( parent );
        }
    }

    return item0;
}


/*
* ---------------------------------------------------------------------------
* $Log: cdd_annot_dialog.cpp,v $
* Revision 1000.2  2004/06/01 18:27:54  gouriano
* PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.39
*
* Revision 1.39  2004/05/21 21:41:38  gorelenk
* Added PCH ncbi_pch.hpp
*
* Revision 1.38  2004/04/02 22:45:03  thiessen
* make stuff visible in global style on show evidence
*
* Revision 1.37  2004/03/15 18:16:33  thiessen
* prefer prefix vs. postfix ++/-- operators
*
* Revision 1.36  2004/02/19 17:04:45  thiessen
* remove cn3d/ from include paths; add pragma to disable annoying msvc warning
*
* Revision 1.35  2003/07/14 18:37:07  thiessen
* change GetUngappedAlignedBlocks() param types; other syntax changes
*
* Revision 1.34  2003/02/03 19:20:01  thiessen
* format changes: move CVS Log to bottom of file, remove std:: from .cpp files, and use new diagnostic macros
*
* Revision 1.33  2002/12/18 15:02:34  thiessen
* fixes for linux/gcc
*
* Revision 1.32  2002/12/12 23:07:18  thiessen
* improved handling of alignment annotation errors
*
* Revision 1.31  2002/11/25 15:02:20  thiessen
* changes for cdd annotation evidence show
*
* Revision 1.30  2002/11/21 18:07:25  thiessen
* show whole objects again on evidence show
*
* Revision 1.29  2002/11/12 20:35:36  thiessen
* use ShowDomainsWithHighlights for structure evidence show
*
* Revision 1.28  2002/11/06 00:18:10  thiessen
* fixes for new CRef/const rules in objects
*
* Revision 1.27  2002/09/06 18:28:46  thiessen
* fix show object bug
*
* Revision 1.26  2002/08/15 22:13:12  thiessen
* update for wx2.3.2+ only; add structure pick dialog; fix MultitextDialog bug
*
* Revision 1.25  2002/04/09 23:59:08  thiessen
* add cdd annotations read-only option
*
* Revision 1.24  2002/04/09 14:38:22  thiessen
* add cdd splash screen
*
* Revision 1.23  2002/03/28 14:06:02  thiessen
* preliminary BLAST/PSSM ; new CD startup style
*
* Revision 1.22  2002/02/12 21:15:59  thiessen
* add move up/down to CDD annotations
*
* Revision 1.21  2002/01/19 15:25:03  thiessen
* tweaks for DebugMT build to work
*
* Revision 1.20  2002/01/19 02:34:35  thiessen
* fixes for changes in asn serialization API
*
* Revision 1.19  2001/12/12 14:04:13  thiessen
* add missing object headers after object loader change
*
* Revision 1.18  2001/12/06 23:13:44  thiessen
* finish import/align new sequences into single-structure data; many small tweaks
*
* Revision 1.17  2001/11/30 14:02:05  thiessen
* progress on sequence imports to single structures
*
* Revision 1.16  2001/11/28 14:16:13  thiessen
* add 'show' to comment + structure name evidence
*
* Revision 1.15  2001/11/27 16:26:07  thiessen
* major update to data management system
*
* Revision 1.14  2001/10/30 02:54:11  thiessen
* add Biostruc cache
*
* Revision 1.13  2001/10/23 20:10:22  thiessen
* fix scaling of fonts in high-res PNG output
*
* Revision 1.12  2001/10/16 21:49:06  thiessen
* restructure MultiTextDialog; allow virtual bonds for alpha-only PDB's
*
* Revision 1.11  2001/10/14 09:27:46  thiessen
* add cdd evidence move up/down
*
* Revision 1.10  2001/10/01 16:04:23  thiessen
* make CDD annotation window non-modal; add SetWindowTitle to viewers
*
* Revision 1.9  2001/09/26 17:09:30  thiessen
* fix rerange bug
*
* Revision 1.8  2001/09/26 15:27:53  thiessen
* tweak sequence viewer widget for wx2.3.2, tweak cdd annotation
*
* Revision 1.7  2001/09/24 14:37:52  thiessen
* more wxPanel stuff - fix for new heirarchy in wx 2.3.2+
*
* Revision 1.6  2001/09/24 13:29:54  thiessen
* fix wxPanel issues
*
* Revision 1.5  2001/09/20 19:31:30  thiessen
* fixes for SGI and wxWin 2.3.2
*
* Revision 1.4  2001/08/27 00:06:23  thiessen
* add structure evidence to CDD annotation
*
* Revision 1.3  2001/08/06 20:22:00  thiessen
* add preferences dialog ; make sure OnCloseWindow get wxCloseEvent
*
* Revision 1.2  2001/07/19 19:14:38  thiessen
* working CDD alignment annotator ; misc tweaks
*
* Revision 1.1  2001/07/12 17:35:15  thiessen
* change domain mapping ; add preliminary cdd annotation GUI
*
*/