cdd_splash_dialog.cpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: cdd_splash_dialog.cpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 18:28:01  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.12
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: cdd_splash_dialog.cpp,v 1000.2 2004/06/01 18:28:01 gouriano Exp $
* ===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Authors:  Paul Thiessen
*
* File Description:
*       dialog for CDD splash screen
*
* ===========================================================================
*/

#ifdef _MSC_VER
#pragma warning(disable:4018)   // disable signed/unsigned mismatch warning in MSVC
#endif

#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>

#include <objects/cdd/Cdd_descr_set.hpp>
#include <objects/cdd/Cdd_descr.hpp>
#include <objects/cdd/Align_annot_set.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/cdd/Align_annot.hpp>
#include <objects/cdd/Feature_evidence.hpp>
#include <objects/biblio/PubMedId.hpp>
#include <objects/mmdb1/Biostruc_id.hpp>
#include <objects/mmdb1/Mmdb_id.hpp>
#include <objects/mmdb3/Biostruc_feature_set.hpp>
#include <objects/mmdb3/Biostruc_feature_set_descr.hpp>
#include <objects/mmdb3/Biostruc_feature.hpp>

#include "cdd_splash_dialog.hpp"
#include "structure_window.hpp"
#include "structure_set.hpp"
#include "cn3d_tools.hpp"
#include "chemical_graph.hpp"
#include "molecule_identifier.hpp"
#include "sequence_set.hpp"


////////////////////////////////////////////////////////////////////////////////////////////////
// The following is taken unmodified from wxDesigner's C++ header from cdd_splash_dialog.wdr
////////////////////////////////////////////////////////////////////////////////////////////////

#include <wx/image.h>
#include <wx/statline.h>
#include <wx/spinbutt.h>
#include <wx/spinctrl.h>
#include <wx/splitter.h>
#include <wx/listctrl.h>
#include <wx/treectrl.h>
#include <wx/notebook.h>
#include <wx/grid.h>

// Declare window functions

#define ID_TEXT 10000
#define ID_ST_NAME 10001
#define ID_T_DESCR 10002
#define ID_B_ANNOT 10003
#define ID_B_REF 10004
#define ID_B_DONE 10005
wxSizer *SetupCDDSplashDialog( wxWindow *parent, bool call_fit = TRUE, bool set_sizer = TRUE );

////////////////////////////////////////////////////////////////////////////////////////////////

USING_NCBI_SCOPE;
USING_SCOPE(objects);


BEGIN_SCOPE(Cn3D)

#define DECLARE_AND_FIND_WINDOW_RETURN_ON_ERR(var, id, type) \
    type *var; \
    var = wxDynamicCast(FindWindow(id), type); \
    if (!var) { \
        ERRORMSG("Can't find window with id " << id); \
        return; \
    }

BEGIN_EVENT_TABLE(CDDSplashDialog, wxDialog)
    EVT_CLOSE       (       CDDSplashDialog::OnCloseWindow)
    EVT_BUTTON      (-1,    CDDSplashDialog::OnButton)
END_EVENT_TABLE()

CDDSplashDialog::CDDSplashDialog(StructureWindow *cn3dFrame,
    StructureSet *structureSet, CDDSplashDialog **parentHandle,
    wxWindow* parent, wxWindowID id, const wxString& title, const wxPoint& pos) :
        wxDialog(parent, id, title, pos, wxDefaultSize, wxDEFAULT_DIALOG_STYLE),
        sSet(structureSet), structureWindow(cn3dFrame), handle(parentHandle)
{
    if (!structureSet) {
        Destroy();
        return;
    }

    // construct the panel
    wxPanel *panel = new wxPanel(this, -1);
    wxSizer *topSizer = SetupCDDSplashDialog(panel, false);

    // fill in info
    DECLARE_AND_FIND_WINDOW_RETURN_ON_ERR(tName, ID_ST_NAME, wxStaticText)
    DECLARE_AND_FIND_WINDOW_RETURN_ON_ERR(tDescr, ID_T_DESCR, wxTextCtrl)
    DECLARE_AND_FIND_WINDOW_RETURN_ON_ERR(bAnnot, ID_B_ANNOT, wxButton)
    DECLARE_AND_FIND_WINDOW_RETURN_ON_ERR(bRef, ID_B_REF, wxButton)

    const string& cddName = structureSet->GetCDDName();
    if (cddName.size() > 0)
        tName->SetLabel(cddName.c_str());

    const string& cddDescr = structureSet->GetCDDDescription();
    if (cddDescr.size() > 0) {
        int i, j;
        for (i=j=0; i<cddDescr.size(); ++i, ++j) {
            if (j > 60 && cddDescr[i] == ' ') {
                *tDescr << '\n';
                j = 0;
            } else
                *tDescr << cddDescr[i];
        }
        *tDescr << "\n\n";
    }

    // summarize annotations
    const CAlign_annot_set *annots = structureSet->GetCDDAnnotSet();
    if (annots && annots->Get().size() > 0) {
        *tDescr << "Annotation summary:\n\n";
        CAlign_annot_set::Tdata::const_iterator a, ae = annots->Get().end();
        for (a=annots->Get().begin(); a!=ae; ++a) {
            *tDescr << ((*a)->IsSetDescription() ? (*a)->GetDescription() : string("")).c_str()
                << "; evidence:\n";
            if ((*a)->IsSetEvidence()) {
                CAlign_annot::TEvidence::const_iterator e, ee = (*a)->GetEvidence().end();
                for (e=(*a)->GetEvidence().begin(); e!=ee; ++e) {
                    if ((*e)->IsComment())
                        *tDescr << "  comment: " << (*e)->GetComment().c_str() << '\n';
                    else if ((*e)->IsReference() && (*e)->GetReference().IsPmid())
                        *tDescr << "  PubMed " << (*e)->GetReference().GetPmid().Get() << '\n';
                    else if ((*e)->IsBsannot()) {
                        *tDescr << "  structure:";
                        if ((*e)->GetBsannot().GetFeatures().size() > 0 &&
                            (*e)->GetBsannot().GetFeatures().front()->IsSetDescr() &&
                            (*e)->GetBsannot().GetFeatures().front()->IsSetDescr() &&
                            (*e)->GetBsannot().GetFeatures().front()->GetDescr().front()->IsName())
                            *tDescr << ' ' <<
                                (*e)->GetBsannot().GetFeatures().front()->GetDescr().front()->GetName().c_str();
                        if ((*e)->GetBsannot().IsSetId() && (*e)->GetBsannot().GetId().front()->IsMmdb_id()) {
                            int mmdbID = (*e)->GetBsannot().GetId().front()->GetMmdb_id().Get();
                            StructureSet::ObjectList::const_iterator o, oe = structureSet->objects.end();
                            for (o=structureSet->objects.begin(); o!=oe; ++o) {
                                if ((*o)->mmdbID == mmdbID) {
                                    *tDescr << " (" << (*o)->pdbID.c_str() << ')';
                                    break;
                                }
                            }
                        }
                        *tDescr << '\n';
                    }
                }
            }
            *tDescr << '\n';
        }
    }

    // summarize structures
    if (structureSet->objects.size() > 0) {
        *tDescr << "Structure summary:\n";
        StructureSet::ObjectList::const_iterator o, oe = structureSet->objects.end();
        for (o=structureSet->objects.begin(); o!=oe; ++o) {
            *tDescr << "\nPDB " << (*o)->pdbID.c_str() << " (MMDB " << (*o)->mmdbID << ")\n";