messenger.cpp

ncbi源码

    ToggleHighlights(molecule->identifier, residueID - 1, residueID - 1, molecule->parentSet);

    if (scrollViewersTo) {
        // make selected residue visible in sequence viewers if residue is in displayed sequence
        SequenceViewerList::iterator t, te = sequenceViewers.end();
        for (t=sequenceViewers.begin(); t!=te; ++t)
            (*t)->MakeResidueVisible(molecule, residueID - 1);
    }
}

bool Messenger::RemoveAllHighlights(bool postRedraws)
{
    bool anyRemoved = highlights.size() > 0;

    if (postRedraws) {
        if (anyRemoved) PostRedrawAllSequenceViewers();

        if (structureWindow) {
            MoleculeHighlightMap::const_iterator h, he = highlights.end();
            for (h=highlights.begin(); h!=he; ++h)
                RedrawMoleculesWithIdentifier(h->first, structureWindow->glCanvas->structureSet);
        }
    }

    highlights.clear();

    return anyRemoved;
}

void Messenger::SetHighlights(const MoleculeHighlightMap& newHighlights)
{
    RemoveAllHighlights(true);
    highlights = newHighlights;

    PostRedrawAllSequenceViewers();
    if (structureWindow) {
        MoleculeHighlightMap::const_iterator h, he = highlights.end();
        for (h=highlights.begin(); h!=he; ++h)
            RedrawMoleculesWithIdentifier(h->first, structureWindow->glCanvas->structureSet);
    }
}

void Messenger::SuspendHighlighting(bool suspend)
{
    if (highlightingSuspended != suspend) {
        highlightingSuspended = suspend;
        if (IsAnythingHighlighted()) {
            PostRedrawAllStructures();
            PostRedrawAllSequenceViewers();
        }
    }
}

bool Messenger::GetHighlightedResiduesWithStructure(MoleculeHighlightMap *residues) const
{
    residues->clear();
    if (!IsAnythingHighlighted()) return false;

    MoleculeHighlightMap::const_iterator h, he = highlights.end();
    for (h=highlights.begin(); h!=he; ++h) {
        if (h->first->HasStructure())
            (*residues)[h->first] = h->second;
    }

    return (residues->size() > 0);
}

CBiostruc_annot_set * Messenger::CreateBiostrucAnnotSetForHighlightsOnSingleObject(void) const
{
    if (!IsAnythingHighlighted()) {
        ERRORMSG("Nothing highlighted");
        return NULL;
    }

    // check to see that all highlights are on a single structure object
    int mmdbID;
    MoleculeHighlightMap::const_iterator h, he = highlights.end();
    for (h=highlights.begin(); h!=he; ++h) {
        if (h == highlights.begin()) mmdbID = h->first->mmdbID;
        if (h->first->mmdbID == MoleculeIdentifier::VALUE_NOT_SET || h->first->mmdbID != mmdbID) {
            ERRORMSG("All highlights must be on a single PDB structure");
            return NULL;
        }
        if (h->first->moleculeID == MoleculeIdentifier::VALUE_NOT_SET) {
            ERRORMSG("internal error - MoleculeIdentifier has no moleculeID");
            return NULL;
        }
    }

    // create the Biostruc-annot-set
    CRef < CBiostruc_annot_set > bas(new CBiostruc_annot_set());

    // set id
    CRef < CBiostruc_id > bid(new CBiostruc_id());
    bas->SetId().push_back(bid);
    bid->SetMmdb_id().Set(mmdbID);

    // create feature set and feature
    CRef < CBiostruc_feature_set > bfs(new CBiostruc_feature_set());
    bas->SetFeatures().push_back(bfs);
    bfs->SetId().Set(1);
    CRef < CBiostruc_feature > bf(new CBiostruc_feature());
    bfs->SetFeatures().push_back(bf);

    // create Chem-graph-pntrs with residues
    CChem_graph_pntrs *cgp = new CChem_graph_pntrs();
    bf->SetLocation().SetSubgraph(*cgp);
    CResidue_pntrs *rp = new CResidue_pntrs();
    cgp->SetResidues(*rp);

    // add all residue intervals
    for (h=highlights.begin(); h!=he; ++h) {
        int first = 0, last = 0;
        while (first < h->second.size()) {

            // find first highlighted residue
            while (first < h->second.size() && !h->second[first]) ++first;
            if (first >= h->second.size()) break;
            // find last in contiguous stretch of highlighted residues
            last = first;
            while (last + 1 < h->second.size() && h->second[last + 1]) ++last;

            // add new interval to list
            CRef < CResidue_interval_pntr > rip(new CResidue_interval_pntr());
            rip->SetMolecule_id().Set(h->first->moleculeID);
            rip->SetFrom().Set(first + 1);  // assume residueID == index + 1
            rip->SetTo().Set(last + 1);
            rp->SetInterval().push_back(rip);

            first = last + 2;
        }
    }

    return bas.Release();
}

bool Messenger::GetHighlightsForSelectionMessage(string *data) const
{
    data->erase();
    if (!IsAnythingHighlighted()) return false;

    CNcbiOstrstream oss;

    MoleculeHighlightMap::const_iterator h, he = highlights.end();
    for (h=highlights.begin(); h!=he; ++h) {

        // add identifier
        if (h->first->pdbID.size() > 0) {
            oss << "pdb " << h->first->pdbID;
            if (h->first->pdbChain != ' ')
                oss << '_' << (char) h->first->pdbChain;
        } else if (h->first->gi != MoleculeIdentifier::VALUE_NOT_SET) {
            oss << "gi " << h->first->gi;
        } else if (h->first->accession.size() > 0) {
            oss << "acc " << h->first->accession;
        } else {
            WARNINGMSG("Messenger::GetHighlightsForSelectionMessage() - unimplemented identifier type");
            continue;
        }

        // add range(s)
        int first = 0, last = 0;
        while (first < h->second.size()) {

            // find first highlighted residue
            while (first < h->second.size() && !h->second[first]) ++first;
            if (first >= h->second.size()) break;

            // find last in contiguous stretch of highlighted residues
            last = first;
            while (last + 1 < h->second.size() && h->second[last + 1]) ++last;

            // add new interval to list
            oss << ' ' << first;
            if (last > first)
                oss << '-' << last;

            first = last + 2;
        }

        oss << '\n';
    }

    oss << '\0';
    auto_ptr<char> d(oss.str());
    *data = d.get();
    return true;
}

void Messenger::SetAllWindowTitles(void) const
{
    SequenceViewerList::const_iterator q, qe = sequenceViewers.end();
    for (q=sequenceViewers.begin(); q!=qe; ++q)
        (*q)->SetWindowTitle();
    if (structureWindow) structureWindow->SetWindowTitle();
}

bool Messenger::IsFileMessengerActive(void) const
{
    return (structureWindow && structureWindow->IsFileMessengerActive());
}

void Messenger::FileMessengerSend(const std::string& toApp,
    const std::string& command, const std::string& data)
{
    if (structureWindow) structureWindow->SendCommand(toApp, command, data);
}

END_SCOPE(Cn3D)


/*
* ---------------------------------------------------------------------------
* $Log: messenger.cpp,v $
* Revision 1000.3  2004/06/01 18:28:39  gouriano
* PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.42
*
* Revision 1.42  2004/05/21 21:41:39  gorelenk
* Added PCH ncbi_pch.hpp
*
* Revision 1.41  2004/03/15 18:25:36  thiessen
* prefer prefix vs. postfix ++/-- operators
*
* Revision 1.40  2004/02/19 17:04:56  thiessen
* remove cn3d/ from include paths; add pragma to disable annoying msvc warning
*
* Revision 1.39  2004/01/08 15:31:02  thiessen
* remove hard-coded CDTree references in messaging; add Cn3DTerminated message upon exit
*
* Revision 1.38  2003/11/15 16:08:36  thiessen
* add stereo
*
* Revision 1.37  2003/07/10 18:47:29  thiessen
* add CDTree->Select command
*
* Revision 1.36  2003/03/13 14:26:18  thiessen
* add file_messaging module; split cn3d_main_wxwin into cn3d_app, cn3d_glcanvas, structure_window, cn3d_tools
*
* Revision 1.35  2003/02/03 19:20:04  thiessen
* format changes: move CVS Log to bottom of file, remove std:: from .cpp files, and use new diagnostic macros
*
* Revision 1.34  2002/10/11 17:21:39  thiessen
* initial Mac OSX build
*
* Revision 1.33  2002/10/07 13:29:31  thiessen
* add double-click -> show row to taxonomy tree
*
* Revision 1.32  2002/09/09 13:38:23  thiessen
* separate save and save-as
*
* Revision 1.31  2002/09/05 18:38:57  thiessen
* add sort by highlights
*
* Revision 1.30  2002/08/15 22:13:14  thiessen
* update for wx2.3.2+ only; add structure pick dialog; fix MultitextDialog bug
*
* Revision 1.29  2002/07/02 16:13:49  thiessen
* allow for NULL structureWindow
*
* Revision 1.28  2002/06/05 14:28:39  thiessen
* reorganize handling of window titles
*
* Revision 1.27  2002/03/04 15:52:13  thiessen
* hide sequence windows instead of destroying ; add perspective/orthographic projection choice
*
* Revision 1.26  2002/02/05 18:53:24  thiessen
* scroll to residue in sequence windows when selected in structure window
*
* Revision 1.25  2002/01/19 02:34:42  thiessen
* fixes for changes in asn serialization API
*
* Revision 1.24  2001/12/12 14:04:13  thiessen
* add missing object headers after object loader change
*
* Revision 1.23  2001/10/23 20:10:23  thiessen
* fix scaling of fonts in high-res PNG output
*
* Revision 1.22  2001/10/01 16:04:24  thiessen
* make CDD annotation window non-modal; add SetWindowTitle to viewers
*
* Revision 1.21  2001/08/27 00:06:23  thiessen
* add structure evidence to CDD annotation
*
* Revision 1.20  2001/08/14 17:18:22  thiessen
* add user font selection, store in registry
*
* Revision 1.19  2001/07/04 19:39:17  thiessen
* finish user annotation system
*
* Revision 1.18  2001/06/29 18:13:57  thiessen
* initial (incomplete) user annotation system
*
* Revision 1.17  2001/06/21 02:02:33  thiessen
* major update to molecule identification and highlighting ; add toggle highlight (via alt)
*
* Revision 1.16  2001/05/11 02:10:42  thiessen
* add better merge fail indicators; tweaks to windowing/taskbar
*
* Revision 1.15  2001/03/30 14:43:41  thiessen
* show threader scores in status line; misc UI tweaks
*
* Revision 1.14  2001/03/22 00:33:17  thiessen
* initial threading working (PSSM only); free color storage in undo stack
*
* Revision 1.13  2001/03/01 20:15:51  thiessen
* major rearrangement of sequence viewer code into base and derived classes
*
* Revision 1.12  2001/02/22 00:30:06  thiessen
* make directories global ; allow only one Sequence per StructureObject
*
* Revision 1.11  2000/12/15 15:51:47  thiessen
* show/hide system installed
*
* Revision 1.10  2000/11/30 15:49:38  thiessen
* add show/hide rows; unpack sec. struc. and domain features
*
* Revision 1.9  2000/11/02 16:56:02  thiessen
* working editor undo; dynamic slave transforms
*
* Revision 1.8  2000/10/19 12:40:54  thiessen
* avoid multiple sequence redraws with scroll set
*
* Revision 1.7  2000/10/12 02:14:56  thiessen
* working block boundary editing
*
* Revision 1.6  2000/10/02 23:25:21  thiessen
* working sequence identifier window in sequence viewer
*
* Revision 1.5  2000/09/15 19:24:22  thiessen
* allow repeated structures w/o different local id
*
* Revision 1.4  2000/09/14 14:55:34  thiessen
* add row reordering; misc fixes
*
* Revision 1.3  2000/09/11 22:57:32  thiessen
* working highlighting
*
* Revision 1.2  2000/09/11 14:06:28  thiessen
* working alignment coloring
*
* Revision 1.1  2000/09/11 01:46:14  thiessen
* working messenger for sequence<->structure window communication
*
*/