newick.tab.cpp

ncbi源码

  if (yyn == YYFINAL)
    YYACCEPT;

  /* Shift the lookahead token.  */
  YYDPRINTF ((stderr, "Shifting token %d (%s), ",
	      yychar, yytname[yychar1]));

  /* Discard the token being shifted unless it is eof.  */
  if (yychar != YYEOF)
    yychar = YYEMPTY;

  *++yyvsp = yylval;
#if YYLSP_NEEDED
  *++yylsp = yylloc;
#endif

  /* Count tokens shifted since error; after three, turn off error
     status.  */
  if (yyerrstatus)
    yyerrstatus--;

  yystate = yyn;
  goto yynewstate;


/*-----------------------------------------------------------.
| yydefault -- do the default action for the current state.  |
`-----------------------------------------------------------*/
yydefault:
  yyn = yydefact[yystate];
  if (yyn == 0)
    goto yyerrlab;
  goto yyreduce;


/*-----------------------------.
| yyreduce -- Do a reduction.  |
`-----------------------------*/
yyreduce:
  /* yyn is the number of a rule to reduce with.  */
  yylen = yyr2[yyn];

  /* If YYLEN is nonzero, implement the default value of the action:
     `$$ = $1'.

     Otherwise, the following line sets YYVAL to the semantic value of
     the lookahead token.  This behavior is undocumented and Bison
     users should not rely upon it.  Assigning to YYVAL
     unconditionally makes the parser a bit smaller, and it avoids a
     GCC warning that YYVAL may be used uninitialized.  */
  yyval = yyvsp[1-yylen];

#if YYLSP_NEEDED
  /* Similarly for the default location.  Let the user run additional
     commands if for instance locations are ranges.  */
  yyloc = yylsp[1-yylen];
  YYLLOC_DEFAULT (yyloc, (yylsp - yylen), yylen);
#endif

#if YYDEBUG
  /* We have to keep this `#if YYDEBUG', since we use variables which
     are defined only if `YYDEBUG' is set.  */
  if (yydebug)
    {
      int yyi;

      YYFPRINTF (stderr, "Reducing via rule %d (line %d), ",
		 yyn, yyrline[yyn]);

      /* Print the symbols being reduced, and their result.  */
      for (yyi = yyprhs[yyn]; yyrhs[yyi] > 0; yyi++)
	YYFPRINTF (stderr, "%s ", yytname[yyrhs[yyi]]);
      YYFPRINTF (stderr, " -> %s\n", yytname[yyr1[yyn]]);
    }
#endif

  switch (yyn) {

case 1:
#line 69 "newick.ypp"
{ 
    g_Tree = yyvsp[-1].nodeval;
;
    break;}
case 2:
#line 75 "newick.ypp"
{ 
    yyval.nodeval = yyvsp[-3].nodeval;
    yyval.nodeval->GetValue().SetDist(yyvsp[0].dblval);
    yyval.nodeval->GetValue().SetId(nodecount);
    nodecount++; 
;
    break;}
case 3:
#line 82 "newick.ypp"
{ 
    yyval.nodeval = yyvsp[-1].nodeval;
    yyval.nodeval->GetValue().SetId(nodecount);
    nodecount++; 
;
    break;}
case 4:
#line 88 "newick.ypp"
{ 
    yyval.nodeval = new TPhyTreeNode;
    yyval.nodeval->GetValue().SetLabel(yyvsp[-2].strval);
    yyval.nodeval->GetValue().SetDist(yyvsp[0].dblval);
    yyval.nodeval->GetValue().SetId(nodecount);
    nodecount++; 
;
    break;}
case 5:
#line 96 "newick.ypp"
{ 
    yyval.nodeval = new TPhyTreeNode;
    yyval.nodeval->GetValue().SetLabel(yyvsp[0].strval);
    yyval.nodeval->GetValue().SetId(nodecount);
    nodecount++; 
;
    break;}
case 6:
#line 105 "newick.ypp"
{
    yyval.nodeval = new TPhyTreeNode;
    yyval.nodeval->AddNode(yyvsp[0].nodeval);
;
    break;}
case 7:
#line 110 "newick.ypp"
{
    yyval.nodeval = yyvsp[-2].nodeval;
    yyval.nodeval->AddNode(yyvsp[0].nodeval);
;
    break;}
}

#line 705 "/usr/share/bison/bison.simple"


  yyvsp -= yylen;
  yyssp -= yylen;
#if YYLSP_NEEDED
  yylsp -= yylen;
#endif

#if YYDEBUG
  if (yydebug)
    {
      short *yyssp1 = yyss - 1;
      YYFPRINTF (stderr, "state stack now");
      while (yyssp1 != yyssp)
	YYFPRINTF (stderr, " %d", *++yyssp1);
      YYFPRINTF (stderr, "\n");
    }
#endif

  *++yyvsp = yyval;
#if YYLSP_NEEDED
  *++yylsp = yyloc;
#endif

  /* Now `shift' the result of the reduction.  Determine what state
     that goes to, based on the state we popped back to and the rule
     number reduced by.  */

  yyn = yyr1[yyn];

  yystate = yypgoto[yyn - YYNTBASE] + *yyssp;
  if (yystate >= 0 && yystate <= YYLAST && yycheck[yystate] == *yyssp)
    yystate = yytable[yystate];
  else
    yystate = yydefgoto[yyn - YYNTBASE];

  goto yynewstate;


/*------------------------------------.
| yyerrlab -- here on detecting error |
`------------------------------------*/
yyerrlab:
  /* If not already recovering from an error, report this error.  */
  if (!yyerrstatus)
    {
      ++yynerrs;

#ifdef YYERROR_VERBOSE
      yyn = yypact[yystate];

      if (yyn > YYFLAG && yyn < YYLAST)
	{
	  YYSIZE_T yysize = 0;
	  char *yymsg;
	  int yyx, yycount;

	  yycount = 0;
	  /* Start YYX at -YYN if negative to avoid negative indexes in
	     YYCHECK.  */
	  for (yyx = yyn < 0 ? -yyn : 0;
	       yyx < (int) (sizeof (yytname) / sizeof (char *)); yyx++)
	    if (yycheck[yyx + yyn] == yyx)
	      yysize += yystrlen (yytname[yyx]) + 15, yycount++;
	  yysize += yystrlen ("parse error, unexpected ") + 1;
	  yysize += yystrlen (yytname[YYTRANSLATE (yychar)]);
	  yymsg = (char *) YYSTACK_ALLOC (yysize);
	  if (yymsg != 0)
	    {
	      char *yyp = yystpcpy (yymsg, "parse error, unexpected ");
	      yyp = yystpcpy (yyp, yytname[YYTRANSLATE (yychar)]);

	      if (yycount < 5)
		{
		  yycount = 0;
		  for (yyx = yyn < 0 ? -yyn : 0;
		       yyx < (int) (sizeof (yytname) / sizeof (char *));
		       yyx++)
		    if (yycheck[yyx + yyn] == yyx)
		      {
			const char *yyq = ! yycount ? ", expecting " : " or ";
			yyp = yystpcpy (yyp, yyq);
			yyp = yystpcpy (yyp, yytname[yyx]);
			yycount++;
		      }
		}
	      yyerror (yymsg);
	      YYSTACK_FREE (yymsg);
	    }
	  else
	    yyerror ("parse error; also virtual memory exhausted");
	}
      else
#endif /* defined (YYERROR_VERBOSE) */
	yyerror ("parse error");
    }
  goto yyerrlab1;


/*--------------------------------------------------.
| yyerrlab1 -- error raised explicitly by an action |
`--------------------------------------------------*/
yyerrlab1:
  if (yyerrstatus == 3)
    {
      /* If just tried and failed to reuse lookahead token after an
	 error, discard it.  */

      /* return failure if at end of input */
      if (yychar == YYEOF)
	YYABORT;
      YYDPRINTF ((stderr, "Discarding token %d (%s).\n",
		  yychar, yytname[yychar1]));
      yychar = YYEMPTY;
    }

  /* Else will try to reuse lookahead token after shifting the error
     token.  */

  yyerrstatus = 3;		/* Each real token shifted decrements this */

  goto yyerrhandle;


/*-------------------------------------------------------------------.
| yyerrdefault -- current state does not do anything special for the |
| error token.                                                       |
`-------------------------------------------------------------------*/
yyerrdefault:
#if 0
  /* This is wrong; only states that explicitly want error tokens
     should shift them.  */

  /* If its default is to accept any token, ok.  Otherwise pop it.  */
  yyn = yydefact[yystate];
  if (yyn)
    goto yydefault;
#endif


/*---------------------------------------------------------------.
| yyerrpop -- pop the current state because it cannot handle the |
| error token                                                    |
`---------------------------------------------------------------*/
yyerrpop:
  if (yyssp == yyss)
    YYABORT;
  yyvsp--;
  yystate = *--yyssp;
#if YYLSP_NEEDED
  yylsp--;
#endif

#if YYDEBUG
  if (yydebug)
    {
      short *yyssp1 = yyss - 1;
      YYFPRINTF (stderr, "Error: state stack now");
      while (yyssp1 != yyssp)
	YYFPRINTF (stderr, " %d", *++yyssp1);
      YYFPRINTF (stderr, "\n");
    }
#endif

/*--------------.
| yyerrhandle.  |
`--------------*/
yyerrhandle:
  yyn = yypact[yystate];
  if (yyn == YYFLAG)
    goto yyerrdefault;

  yyn += YYTERROR;
  if (yyn < 0 || yyn > YYLAST || yycheck[yyn] != YYTERROR)
    goto yyerrdefault;

  yyn = yytable[yyn];
  if (yyn < 0)
    {
      if (yyn == YYFLAG)
	goto yyerrpop;
      yyn = -yyn;
      goto yyreduce;
    }
  else if (yyn == 0)
    goto yyerrpop;

  if (yyn == YYFINAL)
    YYACCEPT;

  YYDPRINTF ((stderr, "Shifting error token, "));

  *++yyvsp = yylval;
#if YYLSP_NEEDED
  *++yylsp = yylloc;
#endif

  yystate = yyn;
  goto yynewstate;


/*-------------------------------------.
| yyacceptlab -- YYACCEPT comes here.  |
`-------------------------------------*/
yyacceptlab:
  yyresult = 0;
  goto yyreturn;

/*-----------------------------------.
| yyabortlab -- YYABORT comes here.  |
`-----------------------------------*/
yyabortlab:
  yyresult = 1;
  goto yyreturn;

/*---------------------------------------------.
| yyoverflowab -- parser overflow comes here.  |
`---------------------------------------------*/
yyoverflowlab:
  yyerror ("parser stack overflow");
  yyresult = 2;
  /* Fall through.  */

yyreturn:
#ifndef yyoverflow
  if (yyss != yyssa)
    YYSTACK_FREE (yyss);
#endif
  return yyresult;
}
#line 117 "newick.ypp"


void yyerror(const char *s)
{
    if (g_Tree) {
        delete g_Tree;
    } else {
        // delete only those nodes that are nobody's children
        vector<TPhyTreeNode*> del_list;
        ITERATE (vector<TPhyTreeNode*>, iter, g_NodeList) {
            if (!(*iter)->GetParent()) {
                del_list.push_back(*iter);
            }
        }
        ITERATE (vector<TPhyTreeNode*>, iter, del_list) {
            delete *iter;
        }
    }
    g_NodeList.clear();
    throw runtime_error(string("error parsing Newick format tree file:  ")
                        + s);
}

void newick_flex_reset(void);

BEGIN_NCBI_SCOPE

TPhyTreeNode *ReadNewickTree(CNcbiIstream& is)
{
    g_NewickIstr = &is;
    g_Tree = 0;
    g_NodeList.clear();
    newick_flex_reset();
    yyparse();
    if (!g_Tree) {
        yyerror("unknown");
    }
    g_NodeList.clear();
    return g_Tree;
}

END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: newick.tab.cpp,v $
 * Revision 1000.1  2004/06/01 18:09:32  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
 *
 * ===========================================================================
 */