spectrumset.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: SpectrumSet.hpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 18:08:55  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.4
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: SpectrumSet.hpp,v 1000.2 2004/06/01 18:08:55 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  and reliability of the software and data, the NLM 
 *  Although all reasonable efforts have been taken to ensure the accuracyand the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  Lewis Y. Geer
 *
 * File Description:
 *   Code for loading in spectrum datasets
 *
 * Remark:
 *   This code was originally generated by application DATATOOL
 *   using specifications from the data definition file
 *   'omssa.asn'.
 */

#ifndef SPECTRUMSET_HPP
#define SPECTRUMSET_HPP


// generated includes
#include <objects/omssa/MSSpectrumset.hpp>

#include <iostream>

// generated classes
BEGIN_NCBI_SCOPE

BEGIN_objects_SCOPE // namespace ncbi::objects::

class NCBI_XOMSSA_EXPORT CSpectrumSet : public CMSSpectrumset {
    //    typedef CMSSpectrumset_Base Tparent;
    typedef CMSSpectrumset Tparent;

public:

    // constructor
    CSpectrumSet(void);
    // destructor
    ~CSpectrumSet(void);

    ///
    /// load in a single dta file
    ///
    int LoadDTA(
		std::istream& DTA  // stream containing dta
		);

    ///
    /// load in multiple dta files with <dta> tag separators
    ///
    int LoadMultDTA(
		    std::istream& DTA  // stream containing tag delimited dtas
		    );

    ///
    /// load multiple dta's separated by a blank line
    ///
    int LoadMultBlankLineDTA(
			     std::istream& DTA  // stream containing blank delimited dtas
			     );

protected:

    ///
    ///  Read in the header of a DTA file
    ///
    void GetDTAHeader(
		      std::istream& DTA,  // input stream
		      CRef <CMSSpectrum>& MySpectrum   // asn.1 container for spectra
		      );

    ///
    /// Read in the body of a dta file
    ///
    bool CSpectrumSet::GetDTABody(
				  std::istream& DTA,   // input stream
				  CRef <CMSSpectrum>& MySpectrum   // asn.1 container for spectra
				  );



private:
    // Prohibit copy constructor and assignment operator
    CSpectrumSet(const CSpectrumSet& value);
    CSpectrumSet& operator=(const CSpectrumSet& value);

};



/////////////////// CSpectrumSet inline methods

// constructor
inline
CSpectrumSet::CSpectrumSet(void)
{
}


// destructor
inline
CSpectrumSet::~CSpectrumSet(void)
{
}

/////////////////// end of CSpectrumSet inline methods



/*
 * ===========================================================================
 *
 * $Log: SpectrumSet.hpp,v $
 * Revision 1000.2  2004/06/01 18:08:55  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.4
 *
 * Revision 1.4  2004/05/27 20:52:15  lewisg
 * better exception checking, use of AutoPtr, command line parsing
 *
 * Revision 1.3  2004/03/16 20:18:54  gorelenk
 * Changed includes of private headers.
 *
 * Revision 1.2  2003/10/24 21:28:41  lewisg
 * add omssa, xomssa, omssacl to win32 build, including dll
 *
 * Revision 1.1  2003/10/20 21:32:13  lewisg
 * ommsa toolkit version
 *
 *
 *
 * ===========================================================================
 */

END_objects_SCOPE // namespace ncbi::objects::

END_NCBI_SCOPE

#endif // SPECTRUMSET_HPP
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