set.ent

ncbi源码

Seq-entry ::= set {
  class phy-set,
  descr {
    create-date std {
      year 1998,
      month 10,
      day 30
    },
    pub {
      pub {
        article {
          title {
            name "Evolution of the Fucaceae (Phaeophyceae) Inferred
 fromnrDNA-ITS"
          },
          authors {
            names std {
              {
                name name {
                  last "Serrao",
                  first "Ester",
                  initials "E.A."
                }
              },
              {
                name name {
                  last "Alice",
                  first "Lawrence",
                  initials "L.A."
                }
              },
              {
                name name {
                  last "Brawley",
                  first "Susan",
                  initials "S.H."
                }
              }
            },
            affil std {
              affil "University of Algarve",
              div "Centro de Ciencias do Mar, U.C.T.R.A.",
              city "Faro",
              country "Portugal",
              street "Campus de Gambelas",
              postal-code "8000"
            }
          },
          from journal {
            title {
              iso-jta "J. Phycol."
            },
            imp {
              date std {
                year 1999
              },
              prepub in-press
            }
          }
        }
      }
    },
    update-date std {
      year 1999,
      month 1,
      day 20
    }
  },
  seq-set {
    seq {
      id {
        genbank {
          name "AF102903",
          accession "AF102903",
          version 1
        },
        gi 4580781
      },
      descr {
        create-date std {
          year 1999,
          month 4,
          day 12
        },
        source {
          org {
            taxname "Fucus ceranoides",
            db {
              {
                db "taxon",
                tag id 87146
              }
            },
            orgname {
              name binomial {
                genus "Fucus",
                species "ceranoides"
              },
              lineage "Eukaryota; stramenopiles;
 Phaeophyceae/Xanthophyceaegroup; Phaeophyceae; Fucales; Fucaceae; Fucus",
              gcode 1,
              mgcode 1,
              div "PLN"
            }
          },
          subtype {
            {
              subtype country,
              name "Great Britain: Isle of Man"
            }
          }
        },
        molinfo {
          biomol genomic,
          completeness no-ends
        },
        title "Fucus ceranoides country Great Britain: Isle of Man
 18Sribosomal RNA gene, partial sequence; internal transcribed spacer 1,
 5.8Sribosomal RNA gene and internal transcribed spacer 2, complete sequence;
 and26S ribosomal RNA gene, partial sequence.",
        pub {
          pub {
            sub {
              authors {
                names std {
                  {
                    name name {
                      last "Serrao",
                      first "Ester",
                      initials "E.A."
                    }
                  },
                  {
                    name name {
                      last "Alice",
                      first "Lawrence",
                      initials "L.A."
                    }
                  },
                  {
                    name name {
                      last "Brawley",
                      first "Susan",
                      initials "S.H."
                    }
                  }
                },
                affil std {
                  affil "University of Algarve",
                  div "Centro de Ciencias do Mar, U.C.T.R.A.",
                  city "Faro",
                  country "Portugal",
                  street "Campus de Gambelas",
                  postal-code "8000"
                }
              },
              date std {
                year 1998,
                month 10,
                day 30
              }
            }
          }
        }
      },
      inst {
        repr raw,
        mol dna,
        length 1012,
        seq-data ncbi4na '8424411441821881221811112111182828828212844444282188
424148288224244128888899111811889188828881848442514422411121244228848818881142
412411811881888111228882428268424442144112244222422842881211124444824125111248
488488888222884222424444412412895124411141818884882484228828818221881518441841
188441251124244125148442822A24884144284244444584484831812281224222428422241118
111422411221241112126228191482491828411821824411441144114411441342883622884884
482828221623412221224224142188121818124811241281111128882142412441848288442822
212812418411411242142411842418128288424128842141182214841182182111128884112421
228842428822444111822284441421842884824414848284884124221182428141222288448282
841824448484828442441281841484882244114248114224224148221224114818481141888481
144222184241121821222422248241148414881484214488444824888124414482228888828228
824141414414444482111188124482242224224812884241444244414118284822484828442488
884214182184111441824182488888482444144281248222222442214241428882112121118421
888118828122822418251421'H
      },
      annot {
        {
          data ftable {
            {
              data rna {
                type rRNA,
                ext name "18S ribosomal RNA"
              },
              partial TRUE,
              location int {
                from 0,
                to 15,
                id gi 4580781,
                fuzz-from lim lt
              }
            },
            {
              data rna {
                type rRNA,
                ext name "5.8S ribosomal RNA"
              },
              location int {
                from 493,
                to 643,
                id gi 4580781
              }
            },
            {
              data rna {
                type rRNA,
                ext name "26S ribosomal RNA"
              },
              partial TRUE,
              location int {
                from 997,
                to 1011,
                id gi 4580781,
                fuzz-to lim gt
              }
            },
            {
              data rna {
                type other,
                ext name "internal transcribed spacer 1"
              },
              comment "ITS1",
              location int {
                from 16,
                to 492,
                strand plus,
                id gi 4580781
              }
            },
            {
              data rna {
                type other,
                ext name "internal transcribed spacer 2"
              },
              comment "ITS2",
              location int {
                from 644,
                to 996,
                strand plus,
                id gi 4580781
              }
            }
          }
        }
      }
    },
    seq {
      id {
        genbank {
          name "AF102904",
          accession "AF102904",
          version 1
        },
        gi 4580782
      },
      descr {
        create-date std {
          year 1999,
          month 4,
          day 12
        },
        source {
          org {
            taxname "Fucus spiralis",
            db {
              {
                db "taxon",
                tag id 87149
              }
            },
            orgname {
              name binomial {
                genus "Fucus",
                species "spiralis"
              },
              lineage "Eukaryota; stramenopiles;
 Phaeophyceae/Xanthophyceaegroup; Phaeophyceae; Fucales; Fucaceae; Fucus",
              gcode 1,
              mgcode 1,
              div "PLN"
            }
          },
          subtype {
            {
              subtype country,
              name "Spain: Canary Islands"
            }
          }
        },
        molinfo {
          biomol genomic,
          completeness no-ends
        },
        title "Fucus spiralis country Spain: Canary Islands 18S ribosomal
 RNAgene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal
 RNAgene and internal transcribed spacer 2, complete sequence; and 26S
 ribosomalRNA gene, partial sequence.",
        pub {
          pub {
            sub {
              authors {
                names std {
                  {
                    name name {
                      last "Serrao",
                      first "Ester",
                      initials "E.A."
                    }
                  },
                  {
                    name name {
                      last "Alice",
                      first "Lawrence",
                      initials "L.A."
                    }
                  },
                  {
                    name name {
                      last "Brawley",
                      first "Susan",
                      initials "S.H."
                    }
                  }
                },
                affil std {
                  affil "University of Algarve",
                  div "Centro de Ciencias do Mar, U.C.T.R.A.",
                  city "Faro",
                  country "Portugal",
                  street "Campus de Gambelas",
                  postal-code "8000"
                }
              },
              date std {
                year 1998,
                month 10,
                day 30
              }
            }
          }
        }
      },
      inst {
        repr raw,
        mol dna,
        length 1024,
        seq-data ncbi4na '8882248144841122842441144182188122181111211118282882
821284444428218842414828822424412888888811181188818882888184844241442241112124
422884881888114241241181188188811122888242822842444214411224422242284288121112
444482412411124848848888882288422242444441241288112441114181888488248422882881
822188141844184118844124112424412414844282282488414428424444448448481181228122
422242842224111811142241122124111212122111148241182841182182441144114411441142
281422884884442828221422412224224142188121818124811241281111128882142412441848
288442822212812418411411242142411184241812482884241288421411822148411821821111
288849124212288424288224441118222844414218428848244148482848841242211824281412
222284482828418244484848284424412818414848822441142481142242241482212241148184
811418884811442221842411218212224222482411484148814842144884448248881244144822
288888282288241414144144444821111881244822442212248128842414442444141182848224
848284424888842141821841114418241824888884824441148281248422222442214241428882
112121118421888118828122822418211421'H
      },
      annot {
        {
          data ftable {
            {
              data rna {
                type rRNA,
                ext name "18S ribosomal RNA"
              },
              partial TRUE,
              location int {
                from 0,
                to 31,
                id gi 4580782,
                fuzz-from lim lt
              }
            },
            {
              data rna {
                type rRNA,
                ext name "5.8S ribosomal RNA"
              },
              location int {
                from 502,
                to 654,
                id gi 4580782
              }
            },
            {
              data rna {
                type rRNA,
                ext name "26S ribosomal RNA"
              },
              partial TRUE,
              location int {
                from 1009,
                to 1023,
                id gi 4580782,
                fuzz-to lim gt
              }
            },
            {
              data rna {
                type other,
                ext name "internal transcribed spacer 1"
              },
              comment "ITS1",
              location int {
                from 32,
                to 501,
                strand plus,
                id gi 4580782
              }
            },
            {
              data rna {
                type other,
                ext name "internal transcribed spacer 2"
              },
              comment "ITS2",
              location int {
                from 655,
                to 1008,
                strand plus,
                id gi 4580782
              }
            }
          }
        }
      }
    }
  },
  annot {
    {
      data align {
        {
          type partial,
          dim 77,
          segs denseg {
            dim 77,
            numseg 10,
            ids {
              gi 4580781
            },
            starts {
              1,
              3,
              3,
              1,
              2,
              4,
              1,
              1,
              1,
              20
            },
            lens {
              1,
              3,
              3,
              1,
              2,
              4,
              1,
              1,
              1,
              20
            },
            strands {
              unknown,
              unknown,
              unknown,
              unknown,
              unknown,
              unknown,
              unknown,
              unknown,
              unknown,
              unknown
            }
          }
        }
      }
    }
  }
}