id1.asn

ncbi源码

--
-- ===========================================================================
-- PRODUCTION $Log: id1.asn,v $
-- PRODUCTION Revision 1000.0  2003/10/29 21:16:22  gouriano
-- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R1.12
-- PRODUCTION
-- ===========================================================================
--

--$Revision: 1000.0 $
--********************************************************************
--
--  Network Id server network access
--  Yaschenko 1996
--
--
--*********************************************************************
--
--  ID1.asn
--
--     messages for id server network access
--
--*********************************************************************

NCBI-ID1Access DEFINITIONS ::=
BEGIN

IMPORTS Seq-id FROM NCBI-Seqloc
		Seq-entry FROM NCBI-Seqset
		Seq-hist  FROM NCBI-Sequence;

        --**********************************
        -- requests
        --

ID1server-request ::= CHOICE {
		init NULL ,             -- DlInit
		getgi Seq-id ,          -- get a gi given a Seq-id
		getsefromgi ID1server-maxcomplex ,   -- given a gi, get the Seq-entry
		fini NULL,               -- DlFini
		getseqidsfromgi	INTEGER, --get all Seq-ids of given gi
		getgihist	INTEGER, --get an historical list of gis 
		getgirev	INTEGER, --get a revision history of gi
		getgistate	INTEGER,  --get a state of gi
		getsewithinfo	ID1server-maxcomplex,
		getblobinfo	ID1server-maxcomplex
}

--  Complexity stuff will be for ID1

ID1server-maxcomplex ::= SEQUENCE {
		maxplex Entry-complexities ,
		gi INTEGER ,
		ent INTEGER OPTIONAL, -- needed when you want to retrieve a given ent
		sat VisibleString OPTIONAL  -- satellite 0-id,1-dbEST
}

Entry-complexities ::= INTEGER {
		entry (0) ,              -- the "natural" entry for this (nuc-prot) 
		bioseq (1) ,             -- only the bioseq identified
		bioseq-set (2) ,         -- any seg-set it may be part of
		nuc-prot (3) ,           -- any nuc-prot it may be part of
		pub-set (4) 
}

ID1Seq-hist ::= SEQUENCE {
	hist Seq-hist
}


ID1server-back ::= CHOICE {
		init NULL ,                 -- DlInit
		error INTEGER ,
		gotgi INTEGER ,                 
		gotseqentry  Seq-entry,  -- live
		gotdeadseqentry  Seq-entry,  -- dead
                fini NULL,                  -- DlFini
		gistate	INTEGER,
		ids	SET OF Seq-id,
		gihist	SET OF ID1Seq-hist,  -- because hand crafted Seq-hist does not follow 
		                             -- same conventions 
		girevhist SET OF ID1Seq-hist,
		gotsewithinfo   ID1SeqEntry-info,
		gotblobinfo	ID1blob-info	
}

ID1server-debug ::= SET OF ID1server-back


ID1blob-info ::= SEQUENCE {
		gi INTEGER ,
		sat INTEGER,
                sat-key INTEGER,
                satname VisibleString,
		suppress	INTEGER,
		withdrawn	INTEGER,
		confidential	INTEGER,
                -- blob-state now contains blob version info.
                -- it's actually minutes from 01/01/1970
                -- and it's negative if blob is dead.
		blob-state	INTEGER,
                comment         VisibleString OPTIONAL, -- public comment for withdrawn record 
		extfeatmask	INTEGER	      OPTIONAL  -- mask for external features (SNP,...)
}

ID1SeqEntry-info ::= SEQUENCE {
		blob-info	ID1blob-info,
		blob		Seq-entry OPTIONAL
}
END