pdb_seq_id.cpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: PDB_seq_id.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 19:34:15  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R6.11
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: PDB_seq_id.cpp,v 1000.1 2004/06/01 19:34:15 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  .......
 *
 * File Description:
 *   .......
 *
 * Remark:
 *   This code was originally generated by application DATATOOL
 *   using specifications from the ASN data definition file
 *   'seqloc.asn'.
 *
 * ---------------------------------------------------------------------------
 * $Log: PDB_seq_id.cpp,v $
 * Revision 1000.1  2004/06/01 19:34:15  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R6.11
 *
 * Revision 6.11  2004/05/19 17:26:25  gorelenk
 * Added include of PCH - ncbi_pch.hpp
 *
 * Revision 6.10  2002/01/09 15:59:30  grichenk
 * Fixed includes
 *
 * Revision 6.9  2001/08/31 16:05:08  clausen
 * Removed upper casing, changed output for vertical bars and lower case in chain.
 *
 * Revision 6.8  2001/06/01 15:37:16  clausen
 * Changed CPDB_seq_id::Match() to use PCase instead of PNocase
 *
 * Revision 6.7  2001/01/07 22:00:58  vakatov
 * Upcase((const string&) GetMol()) -- expl.cast (for WorkShop5 compiler)
 *
 * Revision 6.6  2000/12/26 17:28:55  vasilche
 * Simplified and formatted code.
 *
 * Revision 6.5  2000/12/15 19:30:31  ostell
 * Used Upcase() in AsFastaString() and changed to PNocase().Equals() style
 *
 * Revision 6.4  2000/12/08 22:19:46  ostell
 * changed MakeFastString to AsFastaString and to use ostream instead of string
 *
 * Revision 6.3  2000/12/08 20:45:15  ostell
 * added MakeFastaString()
 *
 * Revision 6.2  2000/11/30 21:56:25  ostell
 * added Match()
 *
 * Revision 6.1  2000/11/30 18:39:26  ostell
 * added Textseq_id.Match
 *
 * ===========================================================================
 */

#include <ncbi_pch.hpp>
#include <objects/seqloc/PDB_seq_id.hpp>
#include <objects/seqloc/PDB_mol_id.hpp>

BEGIN_NCBI_SCOPE
BEGIN_objects_SCOPE // namespace ncbi::objects::


// destructor
CPDB_seq_id::~CPDB_seq_id(void)
{
    return;
}


// comparison function
bool CPDB_seq_id::Match(const CPDB_seq_id& psip2) const
{
    return
        GetChain() == psip2.GetChain()  &&
        PCase().Equals(GetMol(), psip2.GetMol());
}


// format a FASTA style string
ostream& CPDB_seq_id::AsFastaString(ostream& s) const
{
    // no Upcase per Ostell - Karl 7/2001 
    // Output "VB" when chain id is ASCII 124 ('|').
    // Output double upper case letter when chain is a lower case character.
    char chain = (char) GetChain();

    if (chain == '|') {
        return s << GetMol().Get() << "|VB";
    } else if ( islower(chain) != 0 ) {
        return s << GetMol().Get() << '|'
                 << (char) toupper(chain) << (char) toupper(chain);
    } else if ( chain == '\0' ) {
        return s << GetMol().Get() << "| ";
    } 
    return s << GetMol().Get() << '|' << chain; 
}


END_objects_SCOPE // namespace ncbi::objects::
END_NCBI_SCOPE