seqset.asn

ncbi源码

--
-- ===========================================================================
-- PRODUCTION $Log: seqset.asn,v $
-- PRODUCTION Revision 1000.0  2003/10/29 21:36:52  gouriano
-- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R6.2
-- PRODUCTION
-- ===========================================================================
--

--$Revision: 1000.0 $
--**********************************************************************
--
--  NCBI Sequence Collections
--  by James Ostell, 1990
--
--  Version 3.0 - 1994
--
--**********************************************************************

NCBI-Seqset DEFINITIONS ::=
BEGIN

EXPORTS Bioseq-set, Seq-entry;

IMPORTS Bioseq, Seq-annot, Seq-descr FROM NCBI-Sequence
        Object-id, Dbtag, Date FROM NCBI-General;

--*** Sequence Collections ********************************
--*

Bioseq-set ::= SEQUENCE {      -- just a collection
    id Object-id OPTIONAL ,
    coll Dbtag OPTIONAL ,          -- to identify a collection
    level INTEGER OPTIONAL ,       -- nesting level
    class ENUMERATED {
        not-set (0) ,
        nuc-prot (1) ,              -- nuc acid and coded proteins
        segset (2) ,                -- segmented sequence + parts
        conset (3) ,                -- constructed sequence + parts
        parts (4) ,                 -- parts for 2 or 3
        gibb (5) ,                  -- geninfo backbone
        gi (6) ,                    -- geninfo
        genbank (7) ,               -- converted genbank
        pir (8) ,                   -- converted pir
        pub-set (9) ,               -- all the seqs from a single publication
        equiv (10) ,                -- a set of equivalent maps or seqs
        swissprot (11) ,            -- converted SWISSPROT
        pdb-entry (12) ,            -- a complete PDB entry
        mut-set (13) ,              -- set of mutations
        pop-set (14) ,              -- population study
        phy-set (15) ,              -- phylogenetic study
        eco-set (16) ,              -- ecological sample study
        gen-prod-set (17) ,         -- genomic products, chrom+mRNa+protein
        wgs-set (18) ,              -- whole genome shotgun project
        other (255) } DEFAULT not-set ,
    release VisibleString OPTIONAL ,
    date Date OPTIONAL ,
    descr Seq-descr OPTIONAL ,
    seq-set SEQUENCE OF Seq-entry ,
    annot SET OF Seq-annot OPTIONAL }

Seq-entry ::= CHOICE {
        seq Bioseq ,
        set Bioseq-set }

END