seqalign.def

ncbi源码

; 
;  ===========================================================================
;  PRODUCTION $Log: seqalign.def,v $
;  PRODUCTION Revision 1000.1  2004/04/12 17:26:31  gouriano
;  PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R6.7
;  PRODUCTION
;  ===========================================================================
; 

[-]
_export = NCBI_SEQALIGN_EXPORT

[Seq-align]
score._type    = vector

[Dense-diag]
starts.E._type = TSeqPos
len._type      = TSeqPos
; for consistency with Dense-seg.ids
ids._type      = vector
starts._type   = vector
strands._type  = vector
scores._type   = vector

[Dense-seg]
; may contain occurrences of -1
starts.E._type = TSignedSeqPos
lens.E._type   = TSeqPos
; to support binary searching
; to make binary searching on starts more useful
ids._type      = vector
lens._type     = vector
starts._type   = vector
strands._type  = vector
scores._type   = vector

[Packed-seg]
starts.E._type = TSeqPos
lens.E._type   = TSeqPos
ids._type      = vector
lens._type     = vector
starts._type   = vector
strands._type  = vector
scores._type   = vector
present._type  = vector

[Std-seg]
ids._type      = vector
loc._type      = vector
scores._type   = vector