tinyseq.asn

ncbi源码

--
-- ===========================================================================
-- PRODUCTION $Log: tinyseq.asn,v $
-- PRODUCTION Revision 1000.0  2003/10/29 21:40:15  gouriano
-- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R6.1
-- PRODUCTION
-- ===========================================================================
--

--$Revision: 1000.0 $
--**********************************************************************
--
--  ASN.1 for a tiny Bioseq in XML
--    basically a structured FASTA file with a few extras
--    in this case we drop all modularity of components
--      All ids are Optional - simpler structure, less checking
--      Components of organism are hard coded - can't easily add or change
--      sequence is just string whether DNA or protein
--  by James Ostell, 2000
--
--**********************************************************************

NCBI-TSeq DEFINITIONS ::=
BEGIN

TSeq ::= SEQUENCE {
	seqtype ENUMERATED {
		nucleotide (1),
		protein (2) },
	gi INTEGER OPTIONAL,
	accver VisibleString OPTIONAL,
	sid VisibleString OPTIONAL,
	local VisibleString OPTIONAL,
	taxid INTEGER OPTIONAL,
	orgname VisibleString OPTIONAL,
	defline VisibleString,
	length INTEGER,
	sequence VisibleString }

TSeqSet ::= SEQUENCE OF TSeq    -- a bunch of them

END