biosource.cpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: BioSource.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 19:33:45  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R6.3
 * PRODUCTION
 * ===========================================================================
 */

/* $Id: BioSource.cpp,v 1000.1 2004/06/01 19:33:45 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  .......
 *
 * File Description:
 *   .......
 *
 * Remark:
 *   This code was originally generated by application DATATOOL
 *   using specifications from the data definition file
 *   'seqfeat.asn'.
 */

// standard includes

// generated includes
#include <ncbi_pch.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/seqfeat/OrgName.hpp>

// generated classes

BEGIN_NCBI_SCOPE

BEGIN_objects_SCOPE // namespace ncbi::objects::

// destructor
CBioSource::~CBioSource(void)
{
}


int CBioSource::GetGenCode(void) const
{
    try {
        int genome = 0;

        if ( IsSetGenome() ) {
            genome = GetGenome();
        }

        const COrgName& orn = GetOrg().GetOrgname();

        switch ( genome ) {
        case eGenome_kinetoplast:
        case eGenome_mitochondrion:
            // bacteria and plant organelle code
            return orn.GetMgcode();
        case eGenome_chloroplast:
        case eGenome_chromoplast:
        case eGenome_plastid:
        case eGenome_cyanelle:
        case eGenome_apicoplast:
        case eGenome_leucoplast:
        case eGenome_proplastid:
            // bacteria and plant plastids are code 11.
            return 11;
        default:
            return orn.GetGcode();
        }
    } catch ( CCoreException exp ) {
        return 0;
    }
}


END_objects_SCOPE // namespace ncbi::objects::

END_NCBI_SCOPE


/*
* ===========================================================================
*
* $Log: BioSource.cpp,v $
* Revision 1000.1  2004/06/01 19:33:45  gouriano
* PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R6.3
*
* Revision 6.3  2004/05/19 17:26:04  gorelenk
* Added include of PCH - ncbi_pch.hpp
*
* Revision 6.2  2002/11/26 19:01:11  shomrat
* Bug fix in GetGenCode
*
* Revision 6.1  2002/11/26 18:50:31  shomrat
* Add GetGenCode
*
*
* ===========================================================================
*/
/* Original file checksum: lines: 64, chars: 1883, CRC32: e1194deb */