sequtil_tables.cpp

ncbi源码

    0x43, 0x54, 0x54, 0x47,    0x43, 0x54, 0x54, 0x54,
    0x47, 0x41, 0x41, 0x41,    0x47, 0x41, 0x41, 0x43,
    0x47, 0x41, 0x41, 0x47,    0x47, 0x41, 0x41, 0x54,
    0x47, 0x41, 0x43, 0x41,    0x47, 0x41, 0x43, 0x43,
    0x47, 0x41, 0x43, 0x47,    0x47, 0x41, 0x43, 0x54,
    0x47, 0x41, 0x47, 0x41,    0x47, 0x41, 0x47, 0x43,
    0x47, 0x41, 0x47, 0x47,    0x47, 0x41, 0x47, 0x54,
    0x47, 0x41, 0x54, 0x41,    0x47, 0x41, 0x54, 0x43,
    0x47, 0x41, 0x54, 0x47,    0x47, 0x41, 0x54, 0x54,
    0x47, 0x43, 0x41, 0x41,    0x47, 0x43, 0x41, 0x43,
    0x47, 0x43, 0x41, 0x47,    0x47, 0x43, 0x41, 0x54,
    0x47, 0x43, 0x43, 0x41,    0x47, 0x43, 0x43, 0x43,
    0x47, 0x43, 0x43, 0x47,    0x47, 0x43, 0x43, 0x54,
    0x47, 0x43, 0x47, 0x41,    0x47, 0x43, 0x47, 0x43,
    0x47, 0x43, 0x47, 0x47,    0x47, 0x43, 0x47, 0x54,
    0x47, 0x43, 0x54, 0x41,    0x47, 0x43, 0x54, 0x43,
    0x47, 0x43, 0x54, 0x47,    0x47, 0x43, 0x54, 0x54,
    0x47, 0x47, 0x41, 0x41,    0x47, 0x47, 0x41, 0x43,
    0x47, 0x47, 0x41, 0x47,    0x47, 0x47, 0x41, 0x54,
    0x47, 0x47, 0x43, 0x41,    0x47, 0x47, 0x43, 0x43,
    0x47, 0x47, 0x43, 0x47,    0x47, 0x47, 0x43, 0x54,
    0x47, 0x47, 0x47, 0x41,    0x47, 0x47, 0x47, 0x43,
    0x47, 0x47, 0x47, 0x47,    0x47, 0x47, 0x47, 0x54,
    0x47, 0x47, 0x54, 0x41,    0x47, 0x47, 0x54, 0x43,
    0x47, 0x47, 0x54, 0x47,    0x47, 0x47, 0x54, 0x54,
    0x47, 0x54, 0x41, 0x41,    0x47, 0x54, 0x41, 0x43,
    0x47, 0x54, 0x41, 0x47,    0x47, 0x54, 0x41, 0x54,
    0x47, 0x54, 0x43, 0x41,    0x47, 0x54, 0x43, 0x43,
    0x47, 0x54, 0x43, 0x47,    0x47, 0x54, 0x43, 0x54,
    0x47, 0x54, 0x47, 0x41,    0x47, 0x54, 0x47, 0x43,
    0x47, 0x54, 0x47, 0x47,    0x47, 0x54, 0x47, 0x54,
    0x47, 0x54, 0x54, 0x41,    0x47, 0x54, 0x54, 0x43,
    0x47, 0x54, 0x54, 0x47,    0x47, 0x54, 0x54, 0x54,
    0x54, 0x41, 0x41, 0x41,    0x54, 0x41, 0x41, 0x43,
    0x54, 0x41, 0x41, 0x47,    0x54, 0x41, 0x41, 0x54,
    0x54, 0x41, 0x43, 0x41,    0x54, 0x41, 0x43, 0x43,
    0x54, 0x41, 0x43, 0x47,    0x54, 0x41, 0x43, 0x54,
    0x54, 0x41, 0x47, 0x41,    0x54, 0x41, 0x47, 0x43,
    0x54, 0x41, 0x47, 0x47,    0x54, 0x41, 0x47, 0x54,
    0x54, 0x41, 0x54, 0x41,    0x54, 0x41, 0x54, 0x43,
    0x54, 0x41, 0x54, 0x47,    0x54, 0x41, 0x54, 0x54,
    0x54, 0x43, 0x41, 0x41,    0x54, 0x43, 0x41, 0x43,
    0x54, 0x43, 0x41, 0x47,    0x54, 0x43, 0x41, 0x54,
    0x54, 0x43, 0x43, 0x41,    0x54, 0x43, 0x43, 0x43,
    0x54, 0x43, 0x43, 0x47,    0x54, 0x43, 0x43, 0x54,
    0x54, 0x43, 0x47, 0x41,    0x54, 0x43, 0x47, 0x43,
    0x54, 0x43, 0x47, 0x47,    0x54, 0x43, 0x47, 0x54,
    0x54, 0x43, 0x54, 0x41,    0x54, 0x43, 0x54, 0x43,
    0x54, 0x43, 0x54, 0x47,    0x54, 0x43, 0x54, 0x54,
    0x54, 0x47, 0x41, 0x41,    0x54, 0x47, 0x41, 0x43,
    0x54, 0x47, 0x41, 0x47,    0x54, 0x47, 0x41, 0x54,
    0x54, 0x47, 0x43, 0x41,    0x54, 0x47, 0x43, 0x43,
    0x54, 0x47, 0x43, 0x47,    0x54, 0x47, 0x43, 0x54,
    0x54, 0x47, 0x47, 0x41,    0x54, 0x47, 0x47, 0x43,
    0x54, 0x47, 0x47, 0x47,    0x54, 0x47, 0x47, 0x54,
    0x54, 0x47, 0x54, 0x41,    0x54, 0x47, 0x54, 0x43,
    0x54, 0x47, 0x54, 0x47,    0x54, 0x47, 0x54, 0x54,
    0x54, 0x54, 0x41, 0x41,    0x54, 0x54, 0x41, 0x43,
    0x54, 0x54, 0x41, 0x47,    0x54, 0x54, 0x41, 0x54,
    0x54, 0x54, 0x43, 0x41,    0x54, 0x54, 0x43, 0x43,
    0x54, 0x54, 0x43, 0x47,    0x54, 0x54, 0x43, 0x54,
    0x54, 0x54, 0x47, 0x41,    0x54, 0x54, 0x47, 0x43,
    0x54, 0x54, 0x47, 0x47,    0x54, 0x54, 0x47, 0x54,
    0x54, 0x54, 0x54, 0x41,    0x54, 0x54, 0x54, 0x43,
    0x54, 0x54, 0x54, 0x47,    0x54, 0x54, 0x54, 0x54
};


// NCBI2na to NCBI2na_expand
//
//for ( bases[0] = 0; bases[0] < 4; ++bases[0] ) {
//        for ( bases[1] = 0; bases[1] < 4; ++bases[1] ) {
//            for ( bases[2] = 0; bases[2] < 4; ++bases[2] ) {
//                for ( bases[3] = 0; bases[3] < 4; ++bases[3] ) {
//                    Uint1 index =  (bases[0] << 6) | (bases[1] << 4) |
//                                   (bases[2] << 2) | bases[3];
//                    for ( int i = 0; i < 4; ++i ) {
//                        s_Table[index*4 + i] = bases[i];
//                    }
//                }
//            }
//        }
//    }
//
const Uint1 C2naTo2naExpand::scm_Table[1024] = {
    0x0, 0x0, 0x0, 0x0,    0x0, 0x0, 0x0, 0x1,
    0x0, 0x0, 0x0, 0x2,    0x0, 0x0, 0x0, 0x3,
    0x0, 0x0, 0x1, 0x0,    0x0, 0x0, 0x1, 0x1,
    0x0, 0x0, 0x1, 0x2,    0x0, 0x0, 0x1, 0x3,
    0x0, 0x0, 0x2, 0x0,    0x0, 0x0, 0x2, 0x1,
    0x0, 0x0, 0x2, 0x2,    0x0, 0x0, 0x2, 0x3,
    0x0, 0x0, 0x3, 0x0,    0x0, 0x0, 0x3, 0x1,
    0x0, 0x0, 0x3, 0x2,    0x0, 0x0, 0x3, 0x3,
    0x0, 0x1, 0x0, 0x0,    0x0, 0x1, 0x0, 0x1,
    0x0, 0x1, 0x0, 0x2,    0x0, 0x1, 0x0, 0x3,
    0x0, 0x1, 0x1, 0x0,    0x0, 0x1, 0x1, 0x1,
    0x0, 0x1, 0x1, 0x2,    0x0, 0x1, 0x1, 0x3,
    0x0, 0x1, 0x2, 0x0,    0x0, 0x1, 0x2, 0x1,
    0x0, 0x1, 0x2, 0x2,    0x0, 0x1, 0x2, 0x3,
    0x0, 0x1, 0x3, 0x0,    0x0, 0x1, 0x3, 0x1,
    0x0, 0x1, 0x3, 0x2,    0x0, 0x1, 0x3, 0x3,
    0x0, 0x2, 0x0, 0x0,    0x0, 0x2, 0x0, 0x1,
    0x0, 0x2, 0x0, 0x2,    0x0, 0x2, 0x0, 0x3,
    0x0, 0x2, 0x1, 0x0,    0x0, 0x2, 0x1, 0x1,
    0x0, 0x2, 0x1, 0x2,    0x0, 0x2, 0x1, 0x3,
    0x0, 0x2, 0x2, 0x0,    0x0, 0x2, 0x2, 0x1,
    0x0, 0x2, 0x2, 0x2,    0x0, 0x2, 0x2, 0x3,
    0x0, 0x2, 0x3, 0x0,    0x0, 0x2, 0x3, 0x1,
    0x0, 0x2, 0x3, 0x2,    0x0, 0x2, 0x3, 0x3,
    0x0, 0x3, 0x0, 0x0,    0x0, 0x3, 0x0, 0x1,
    0x0, 0x3, 0x0, 0x2,    0x0, 0x3, 0x0, 0x3,
    0x0, 0x3, 0x1, 0x0,    0x0, 0x3, 0x1, 0x1,
    0x0, 0x3, 0x1, 0x2,    0x0, 0x3, 0x1, 0x3,
    0x0, 0x3, 0x2, 0x0,    0x0, 0x3, 0x2, 0x1,
    0x0, 0x3, 0x2, 0x2,    0x0, 0x3, 0x2, 0x3,
    0x0, 0x3, 0x3, 0x0,    0x0, 0x3, 0x3, 0x1,
    0x0, 0x3, 0x3, 0x2,    0x0, 0x3, 0x3, 0x3,
    0x1, 0x0, 0x0, 0x0,    0x1, 0x0, 0x0, 0x1,
    0x1, 0x0, 0x0, 0x2,    0x1, 0x0, 0x0, 0x3,
    0x1, 0x0, 0x1, 0x0,    0x1, 0x0, 0x1, 0x1,
    0x1, 0x0, 0x1, 0x2,    0x1, 0x0, 0x1, 0x3,
    0x1, 0x0, 0x2, 0x0,    0x1, 0x0, 0x2, 0x1,
    0x1, 0x0, 0x2, 0x2,    0x1, 0x0, 0x2, 0x3,
    0x1, 0x0, 0x3, 0x0,    0x1, 0x0, 0x3, 0x1,
    0x1, 0x0, 0x3, 0x2,    0x1, 0x0, 0x3, 0x3,
    0x1, 0x1, 0x0, 0x0,    0x1, 0x1, 0x0, 0x1,
    0x1, 0x1, 0x0, 0x2,    0x1, 0x1, 0x0, 0x3,
    0x1, 0x1, 0x1, 0x0,    0x1, 0x1, 0x1, 0x1,
    0x1, 0x1, 0x1, 0x2,    0x1, 0x1, 0x1, 0x3,
    0x1, 0x1, 0x2, 0x0,    0x1, 0x1, 0x2, 0x1,
    0x1, 0x1, 0x2, 0x2,    0x1, 0x1, 0x2, 0x3,
    0x1, 0x1, 0x3, 0x0,    0x1, 0x1, 0x3, 0x1,
    0x1, 0x1, 0x3, 0x2,    0x1, 0x1, 0x3, 0x3,
    0x1, 0x2, 0x0, 0x0,    0x1, 0x2, 0x0, 0x1,
    0x1, 0x2, 0x0, 0x2,    0x1, 0x2, 0x0, 0x3,
    0x1, 0x2, 0x1, 0x0,    0x1, 0x2, 0x1, 0x1,
    0x1, 0x2, 0x1, 0x2,    0x1, 0x2, 0x1, 0x3,
    0x1, 0x2, 0x2, 0x0,    0x1, 0x2, 0x2, 0x1,
    0x1, 0x2, 0x2, 0x2,    0x1, 0x2, 0x2, 0x3,
    0x1, 0x2, 0x3, 0x0,    0x1, 0x2, 0x3, 0x1,
    0x1, 0x2, 0x3, 0x2,    0x1, 0x2, 0x3, 0x3,
    0x1, 0x3, 0x0, 0x0,    0x1, 0x3, 0x0, 0x1,
    0x1, 0x3, 0x0, 0x2,    0x1, 0x3, 0x0, 0x3,
    0x1, 0x3, 0x1, 0x0,    0x1, 0x3, 0x1, 0x1,
    0x1, 0x3, 0x1, 0x2,    0x1, 0x3, 0x1, 0x3,
    0x1, 0x3, 0x2, 0x0,    0x1, 0x3, 0x2, 0x1,
    0x1, 0x3, 0x2, 0x2,    0x1, 0x3, 0x2, 0x3,
    0x1, 0x3, 0x3, 0x0,    0x1, 0x3, 0x3, 0x1,
    0x1, 0x3, 0x3, 0x2,    0x1, 0x3, 0x3, 0x3,
    0x2, 0x0, 0x0, 0x0,    0x2, 0x0, 0x0, 0x1,
    0x2, 0x0, 0x0, 0x2,    0x2, 0x0, 0x0, 0x3,
    0x2, 0x0, 0x1, 0x0,    0x2, 0x0, 0x1, 0x1,
    0x2, 0x0, 0x1, 0x2,    0x2, 0x0, 0x1, 0x3,
    0x2, 0x0, 0x2, 0x0,    0x2, 0x0, 0x2, 0x1,
    0x2, 0x0, 0x2, 0x2,    0x2, 0x0, 0x2, 0x3,
    0x2, 0x0, 0x3, 0x0,    0x2, 0x0, 0x3, 0x1,
    0x2, 0x0, 0x3, 0x2,    0x2, 0x0, 0x3, 0x3,
    0x2, 0x1, 0x0, 0x0,    0x2, 0x1, 0x0, 0x1,
    0x2, 0x1, 0x0, 0x2,    0x2, 0x1, 0x0, 0x3,
    0x2, 0x1, 0x1, 0x0,    0x2, 0x1, 0x1, 0x1,
    0x2, 0x1, 0x1, 0x2,    0x2, 0x1, 0x1, 0x3,
    0x2, 0x1, 0x2, 0x0,    0x2, 0x1, 0x2, 0x1,
    0x2, 0x1, 0x2, 0x2,    0x2, 0x1, 0x2, 0x3,
    0x2, 0x1, 0x3, 0x0,    0x2, 0x1, 0x3, 0x1,
    0x2, 0x1, 0x3, 0x2,    0x2, 0x1, 0x3, 0x3,
    0x2, 0x2, 0x0, 0x0,    0x2, 0x2, 0x0, 0x1,
    0x2, 0x2, 0x0, 0x2,    0x2, 0x2, 0x0, 0x3,
    0x2, 0x2, 0x1, 0x0,    0x2, 0x2, 0x1, 0x1,
    0x2, 0x2, 0x1, 0x2,    0x2, 0x2, 0x1, 0x3,
    0x2, 0x2, 0x2, 0x0,    0x2, 0x2, 0x2, 0x1,
    0x2, 0x2, 0x2, 0x2,    0x2, 0x2, 0x2, 0x3,
    0x2, 0x2, 0x3, 0x0,    0x2, 0x2, 0x3, 0x1,
    0x2, 0x2, 0x3, 0x2,    0x2, 0x2, 0x3, 0x3,
    0x2, 0x3, 0x0, 0x0,    0x2, 0x3, 0x0, 0x1,
    0x2, 0x3, 0x0, 0x2,    0x2, 0x3, 0x0, 0x3,
    0x2, 0x3, 0x1, 0x0,    0x2, 0x3, 0x1, 0x1,
    0x2, 0x3, 0x1, 0x2,    0x2, 0x3, 0x1, 0x3,
    0x2, 0x3, 0x2, 0x0,    0x2, 0x3, 0x2, 0x1,
    0x2, 0x3, 0x2, 0x2,    0x2, 0x3, 0x2, 0x3,
    0x2, 0x3, 0x3, 0x0,    0x2, 0x3, 0x3, 0x1,
    0x2, 0x3, 0x3, 0x2,    0x2, 0x3, 0x3, 0x3,
    0x3, 0x0, 0x0, 0x0,    0x3, 0x0, 0x0, 0x1,
    0x3, 0x0, 0x0, 0x2,    0x3, 0x0, 0x0, 0x3,
    0x3, 0x0, 0x1, 0x0,    0x3, 0x0, 0x1, 0x1,
    0x3, 0x0, 0x1, 0x2,    0x3, 0x0, 0x1, 0x3,
    0x3, 0x0, 0x2, 0x0,    0x3, 0x0, 0x2, 0x1,
    0x3, 0x0, 0x2, 0x2,    0x3, 0x0, 0x2, 0x3,
    0x3, 0x0, 0x3, 0x0,    0x3, 0x0, 0x3, 0x1,
    0x3, 0x0, 0x3, 0x2,    0x3, 0x0, 0x3, 0x3,
    0x3, 0x1, 0x0, 0x0,    0x3, 0x1, 0x0, 0x1,
    0x3, 0x1, 0x0, 0x2,    0x3, 0x1, 0x0, 0x3,
    0x3, 0x1, 0x1, 0x0,    0x3, 0x1, 0x1, 0x1,
    0x3, 0x1, 0x1, 0x2,    0x3, 0x1, 0x1, 0x3,
    0x3, 0x1, 0x2, 0x0,    0x3, 0x1, 0x2, 0x1,
    0x3, 0x1, 0x2, 0x2,    0x3, 0x1, 0x2, 0x3,
    0x3, 0x1, 0x3, 0x0,    0x3, 0x1, 0x3, 0x1,
    0x3, 0x1, 0x3, 0x2,    0x3, 0x1, 0x3, 0x3,
    0x3, 0x2, 0x0, 0x0,    0x3, 0x2, 0x0, 0x1,
    0x3, 0x2, 0x0, 0x2,    0x3, 0x2, 0x0, 0x3,
    0x3, 0x2, 0x1, 0x0,    0x3, 0x2, 0x1, 0x1,
    0x3, 0x2, 0x1, 0x2,    0x3, 0x2, 0x1, 0x3,
    0x3, 0x2, 0x2, 0x0,    0x3, 0x2, 0x2, 0x1,
    0x3, 0x2, 0x2, 0x2,    0x3, 0x2, 0x2, 0x3,
    0x3, 0x2, 0x3, 0x0,    0x3, 0x2, 0x3, 0x1,
    0x3, 0x2, 0x3, 0x2,    0x3, 0x2, 0x3, 0x3,
    0x3, 0x3, 0x0, 0x0,    0x3, 0x3, 0x0, 0x1,
    0x3, 0x3, 0x0, 0x2,    0x3, 0x3, 0x0, 0x3,
    0x3, 0x3, 0x1, 0x0,    0x3, 0x3, 0x1, 0x1,
    0x3, 0x3, 0x1, 0x2,    0x3, 0x3, 0x1, 0x3,
    0x3, 0x3, 0x2, 0x0,    0x3, 0x3, 0x2, 0x1,
    0x3, 0x3, 0x2, 0x2,    0x3, 0x3, 0x2, 0x3,
    0x3, 0x3, 0x3, 0x0,    0x3, 0x3, 0x3, 0x1,
    0x3, 0x3, 0x3, 0x2,    0x3, 0x3, 0x3, 0x3
};


// NCBI2na to NCBI4na
/*
    static Uint1 convert[4] = { 0x1, 0x2, 0x4, 0x8 };
    for ( base[0] = 0; base[0] < 4; ++base[0] ) {
        for ( base[1] = 0; base[1] < 4; ++base[1] ) {
            for ( base[2] = 0; base[2] < 4; ++base[2] ) {
                for ( base[3] = 0; base[3] < 4; ++base[3] ) {
                    Uint1 index =  (base[0] << 6) | (base[1] << 4) |
                                   (base[2] << 2) | base[3];
                    scm_Table0[index * 2] = 
                        (convert[base[0]] << 4) | convert[base[1]];
                    scm_Table0[index * 2 + 1] = 
                        (convert[base[2]] << 4) | convert[base[3]];
                }
            }
        }
    }
*/
const Uint1 C2naTo4na::scm_Table0[512] = {
    0x11, 0x11,    0x11, 0x12,    0x11, 0x14,    0x11, 0x18,
    0x11, 0x21,    0x11, 0x22,    0x11, 0x24,    0x11, 0x28,
    0x11, 0x41,    0x11, 0x42,    0x11, 0x44,    0x11, 0x48,
    0x11, 0x81,    0x11, 0x82,    0x11, 0x84,    0x11, 0x88,
    0x12, 0x11,    0x12, 0x12,    0x12, 0x14,    0x12, 0x18,
    0x12, 0x21,    0x12, 0x22,    0x12, 0x24,    0x12, 0x28,
    0x12, 0x41,    0x12, 0x42,    0x12, 0x44,    0x12, 0x48,
    0x12, 0x81,    0x12, 0x82,    0x12, 0x84,    0x12, 0x88,
    0x14, 0x11,    0x14, 0x12,    0x14, 0x14,    0x14, 0x18,
    0x14, 0x21,    0x14, 0x22,    0x14, 0x24,    0x14, 0x28,
    0x14, 0x41,    0x14, 0x42,    0x14, 0x44,    0x14, 0x48,
    0x14, 0x81,    0x14, 0x82,    0x14, 0x84,    0x14, 0x88,
    0x18, 0x11,    0x18, 0x12,    0x18, 0x14,    0x18, 0x18,
    0x18, 0x21,    0x18, 0x22,    0x18, 0x24,    0x18, 0x28,
    0x18, 0x41,    0x18, 0x42,    0x18, 0x44,    0x18, 0x48,
    0x18, 0x81,    0x18, 0x82,    0x18, 0x84,    0x18, 0x88,
    0x21, 0x11,    0x21, 0x12,    0x21, 0x14,    0x21, 0x18,
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