alignment_smear_layout.cpp

来自「ncbi源码」· C++ 代码 · 共 96 行

/*
 * ===========================================================================
 * PRODUCTION $Log: alignment_smear_layout.cpp,v $
 * PRODUCTION Revision 1000.0  2004/06/01 21:19:58  gouriano
 * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: alignment_smear_layout.cpp,v 1000.0 2004/06/01 21:19:58 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Robert Smith
 *
 * File Description:
 *    CLayoutAlignSmear -- class for having alignment smears in graphical layouts.
 *
 */

#include <ncbi_pch.hpp>
#include <gui/objutils/alignment_smear_layout.hpp>


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);



//
// CLayoutAlignSmear::CLayoutAlignSmear()
//
CLayoutAlignSmear::CLayoutAlignSmear(
        const objects::CBioseq_Handle& handle, 
        TSeqPos start, 
        TSeqPos stop, 
        TSeqPos window,
        CAlignmentSmear::EAlignSmearStrand strand_type,
        const CSeq_annot& seq_annot
        )
    : m_AlignSmear(new CAlignmentSmear(handle, start, stop, window, strand_type))
{
    m_AlignSmear->AddAnnot(seq_annot);
    
    // create a fake location. It will take a whole row in GUI layout
    m_Location.Reset(new CSeq_loc());
    m_Location->SetInt().SetFrom(0);
    m_Location->SetInt().SetTo(INT_MAX);
}



END_NCBI_SCOPE



/*
 * ===========================================================================
 * $Log: alignment_smear_layout.cpp,v $
 * Revision 1000.0  2004/06/01 21:19:58  gouriano
 * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
 *
 * Revision 1.2  2004/05/21 22:27:43  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.1  2004/04/30 11:48:15  dicuccio
 * Initial commit - split out from src/gui/utils
 *
 * Revision 1.1  2004/03/22 16:40:55  rsmith
 * initial checkin
 *
 *
 * ===========================================================================
 */