utils.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: utils.hpp,v $
 * PRODUCTION Revision 1000.1  2004/04/12 19:31:27  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_PLUGINS_ALGO___UTILS__HPP
#define GUI_PLUGINS_ALGO___UTILS__HPP

/*  $Id: utils.hpp,v 1000.1 2004/04/12 19:31:27 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <objects/seqfeat/Org_ref.hpp>
#include <objmgr/bioseq_handle.hpp>


BEGIN_NCBI_SCOPE


/// Return the org-ref associated with a given bioseq handle.
/// This makes use of the object manager's iterators to insure proper
/// retrieval and filtering of the appropriate descriptors, and
/// returns the org-ref if it is found.  The return value should
/// be tested for validity, as an empty CConstRef<> will be returned
/// if no org-ref is found.
CConstRef<objects::COrg_ref> GetOrganism(const objects::CBioseq_Handle& handle);


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: utils.hpp,v $
 * Revision 1000.1  2004/04/12 19:31:27  gouriano
 * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
 *
 * Revision 1.3  2004/02/27 17:01:19  dicuccio
 * Un-inlined GetOrganism()
 *
 * Revision 1.2  2004/02/09 19:18:51  grichenk
 * Renamed CDesc_CI to CSeq_descr_CI. Redesigned CSeq_descr_CI
 * and CSeqdesc_CI to avoid using data directly.
 *
 * Revision 1.1  2003/09/25 17:49:17  dicuccio
 * Cleaned up handling of org-refs - implemented private function to return the
 * apporpriate COrg_ref.  Added virtual destructors where necessary
 *
 * ===========================================================================
 */

#endif  // GUI_PLUGINS_ALGO___UTILS__HPP