net_blast_reply.cpp

来自「ncbi源码」· C++ 代码 · 共 232 行

/*
 * ===========================================================================
 * PRODUCTION $Log: net_blast_reply.cpp,v $
 * PRODUCTION Revision 1000.5  2004/06/01 20:54:37  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: net_blast_reply.cpp,v 1000.5 2004/06/01 20:54:37 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Clifford Clausen, Michael DiCuccio
 *
 * File Description:
 *    CDataPlugin_BlastReply -- obtains results from previous blast request
 */

#include <ncbi_pch.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/plugin/PluginInfo.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginReply.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/core/version.hpp>

#include "net_blast_reply.hpp"
#include "dlg_blastpoll.hpp"

#include <objects/seqloc/Seq_loc.hpp>


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);


//
// plugin factory for retrieving results from a BLAST search
//

void CDataPlugin_BlastReply::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CDataPlugin_BlastReply", 
                 "BLAST Request ID",
                 "Retrieves BLAST results by request ID",
                 "");

    // command info
    CPluginCommand& cmd =
        info.SetCommands().AddDataCommand(eDataCommand_load);

    // This argument is optional. If it is not present,
    // the Polling dialog box is reopened and polling
    // continues with any rids for which data has not yet
    // been retrieved. If an rid is present, the rid is added to
    // the poll list.
    cmd.AddOptionalArgument("RID", "Request ID", CPluginArg::eString);
    
    // Seq-loc used as the query for the search, so that the
    // alignments returned by blast can be remapped to orinal
    // sequence coordinates.
    cmd.AddOptionalArgument("query_loc",
                            "Query Seq-loc", CSeq_loc::GetTypeInfo());
    cmd["query_loc"].SetHidden(true);

    // Argument to pass the net blast program name so that
    // it can be added to the description in the poll dialog.
    cmd.AddOptionalArgument("prog", "Program Name", CPluginArg::eString);
    cmd["prog"].SetHidden(true);

}


CDataPlugin_BlastReply::CDataPlugin_BlastReply()
{
    m_PollView.reset(new CBlastPollDlg());
}

void CDataPlugin_BlastReply::Load(CPluginMessage& msg)
{
    const CPluginCommand& cmd = msg.GetRequest().GetCommand();
    CPluginReply& reply = msg.SetReply();
    reply.SetStatus(eMessageStatus_success);

    m_PollView->Show();
    m_PollView->Add(cmd);
    m_PollView->StartPoll();
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: net_blast_reply.cpp,v $
 * Revision 1000.5  2004/06/01 20:54:37  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 *
 * Revision 1.10  2004/05/21 22:27:46  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.9  2004/04/07 12:54:10  dicuccio
 * +Seq_loc.hpp
 *
 * Revision 1.8  2004/03/05 17:32:15  dicuccio
 * Large-scale clean-up to blast code.  Reorganized blast polling dialog to be
 * multi-column; standardized options for BLAST network submissions; changed
 * plugin to accept multiple locations for submission and create a submission for
 * each
 *
 * Revision 1.7  2004/02/18 19:02:36  jcherry
 * Query is now a Seq-loc, to which alignments get remapped
 *
 * Revision 1.6  2004/01/27 18:40:12  dicuccio
 * Code clean-up.  Renamed plugin classes to follow standard pattern
 *
 * Revision 1.5  2003/11/24 15:45:21  dicuccio
 * Renamed CVersion to CPluginVersion
 *
 * Revision 1.4  2003/11/17 16:37:25  clausen
 * Removed arg scope, added args doc and prog
 *
 * Revision 1.3  2003/11/04 17:49:22  dicuccio
 * Changed calling parameters for plugins - pass CPluginMessage instead of
 * paired CPluginCommand/CPluginReply
 *
 * Revision 1.2  2003/10/31 17:32:09  clausen
 * Switched from passing scope to passing document
 *
 * Revision 1.1  2003/10/24 12:49:21  dicuccio
 * Moved files from algo/net_blast
 *
 * Revision 1.18  2003/10/24 12:25:41  clausen
 * Fixed fltk blocking
 *
 * Revision 1.17  2003/07/23 19:14:09  dicuccio
 * Moved logic for validating plugin arguments into CPluginUtils.
 *
 * Revision 1.16  2003/07/14 11:14:28  shomrat
 * Plugin messageing system related changes
 *
 * Revision 1.15  2003/07/10 13:06:20  dicuccio
 * Fixed compilation issues for gcc-3.3: restructured callback mechanism,
 * replaced multiple parallel arrays with an array of classes.
 *
 * Revision 1.14  2003/06/20 19:45:19  dicuccio
 * Fixed bizarre compile error related to namespaces on MSVC
 *
 * Revision 1.13  2003/06/20 14:52:11  dicuccio
 * Revised plugin registration.  Made poll dialog a member of the plugin
 *
 * Revision 1.12  2003/06/13 12:09:27  clausen
 * Changed to handle RID as optional
 *
 * Revision 1.11  2003/06/04 18:29:48  clausen
 * Initial version
 *
 * Revision 1.10  2003/06/02 16:06:21  dicuccio
 * Rearranged src/objects/ subtree.  This includes the following shifts:
 *     - src/objects/asn2asn --> arc/app/asn2asn
 *     - src/objects/testmedline --> src/objects/ncbimime/test
 *     - src/objects/objmgr --> src/objmgr
 *     - src/objects/util --> src/objmgr/util
 *     - src/objects/alnmgr --> src/objtools/alnmgr
 *     - src/objects/flat --> src/objtools/flat
 *     - src/objects/validator --> src/objtools/validator
 *     - src/objects/cddalignview --> src/objtools/cddalignview
 * In addition, libseq now includes six of the objects/seq... libs, and libmmdb
 * replaces the three libmmdb? libs.
 *
 * Revision 1.9  2003/05/30 14:15:42  dicuccio
 * Renamed MessageBox to NcbiMessageBox because brain-dead MSVC thinks this is
 * ::MessageBox and rewrites the symbol as MessageBoxA, which results in an
 * unresolved external and conflict with the Win32 API :(.
 *
 * Revision 1.8  2003/05/30 13:00:59  dicuccio
 * Use MessageBox() instead of fl_message()
 *
 * Revision 1.7  2003/05/23 18:30:48  lavr
 * Unnecessary explicit #include <connect/ncbi_conn_stream.hpp> removed
 *
 * Revision 1.6  2003/05/19 13:39:43  dicuccio
 * Moved gui/core/plugin/ --> gui/plugin/.  Merged core libraries into
 * libgui_core
 *
 * Revision 1.5  2003/05/13 13:46:24  dicuccio
 * Reorganized header files - should compile now
 *
 * Revision 1.4  2003/05/12 16:09:19  dicuccio
 * Updated to use new plugin action args
 *
 * Revision 1.3  2003/05/09 19:44:28  clausen
 * Added polling
 *
 * Revision 1.2  2003/05/09 16:54:00  dicuccio
 * Converted CNetBlastReply from algorithm -> data loader plugin
 *
 * Revision 1.1  2003/05/07 12:38:59  clausen
 * Initial version of net blast
 *
 *
 * ===========================================================================
 */