blast_util.hpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: blast_util.hpp,v $
 * PRODUCTION Revision 1000.1  2004/04/16 17:50:11  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP
#define GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP

/*  $Id: blast_util.hpp,v 1000.1 2004/04/16 17:50:11 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <algo/blast/api/blast_options.hpp>
#include <gui/plugin/PluginCommand.hpp>

BEGIN_NCBI_SCOPE


class CBlastUtils
{
public:

    static void AddBlastArgs(objects::CPluginCommand& cmd,
                             blast::EProgram prog);

    static void ArgsToBlastOptions(const objects::CPluginCommand& args,
                                   blast::CBlastOptions& opts);

    // retrieve the blast program from a string-based encoding
    static blast::EProgram GetBlastProgram(const string& str);
};



END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: blast_util.hpp,v $
 * Revision 1000.1  2004/04/16 17:50:11  gouriano
 * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
 *
 * Revision 1.2  2004/04/16 14:41:22  dicuccio
 * Added GetBlastProgram() - convert text-based program name to enum
 *
 * Revision 1.1  2004/01/13 20:35:27  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */

#endif  // GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP