net_blast_req_base.hpp

来自「ncbi源码」· HPP 代码 · 共 98 行

/*
 * ===========================================================================
 * PRODUCTION $Log: net_blast_req_base.hpp,v $
 * PRODUCTION Revision 1000.2  2004/04/16 17:50:25  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.4
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_PLUGINS_ALGO_NET_BLAST___NET_BLAST_BASE__HPP
#define GUI_PLUGINS_ALGO_NET_BLAST___NET_BLAST_BASE__HPP

/*  $Id: net_blast_req_base.hpp,v 1000.2 2004/04/16 17:50:25 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Clifford Clausen, Mike DiCuccio
 *
 * File Description:
 *
 */

#include <corelib/ncbistd.hpp>
#include <gui/core/algo.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/plugin/PluginValueConstraint.hpp>
#include <algo/blast/api/remote_blast.hpp>
#include <objects/blast/Blast4_get_databases_reply.hpp>
#include <objects/blast/Blast4_database_info.hpp>

BEGIN_NCBI_SCOPE


class CNetBlastReq_Base
{
public:
    virtual ~CNetBlastReq_Base() {}

    // internal handler for RunCommand(), called by derived classes
    void RunCommand(objects::CPluginMessage& msg);

    // FinalizeArgs() retrieves the list of valid databases and
    // adds a constraint to manage these
    void FinalizeArgs(objects::CPluginMessage& msg);

    typedef map<string, CRef<objects::CBlast4_database_info> > TDbMap;
    static TDbMap sm_DbMap;

private:
    objects::CBioseq* x_SeqLocToBioseq(const objects::CSeq_loc& loc,
                                       objects::CScope& scope);

    blast::CRemoteBlast* x_GetClient(const objects::CPluginCommand& cmd);

    // results of our get-databases request
    static CRef<objects::CBlast4_get_databases_reply> sm_Databases;

    // constraint objects that hold the databases of interest
    // we have two of these - one for protein submissions, one for nucleotide
    // submissions
    static CRef<objects::CPluginValueConstraint> sm_DbConstraint_Nucs;
    static CRef<objects::CPluginValueConstraint> sm_DbConstraint_Prots;
};


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: 
 *
 * ===========================================================================
 */

#endif  // GUI_PLUGINS_ALGO_NET_BLAST___NET_BLAST_BASE__HPP