blast_base.hpp

来自「ncbi源码」· HPP 代码 · 共 104 行

/*
 * ===========================================================================
 * PRODUCTION $Log: blast_base.hpp,v $
 * PRODUCTION Revision 1000.2  2004/04/12 19:27:15  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP
#define GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP

/*  $Id: blast_base.hpp,v 1000.2 2004/04/12 19:27:15 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <corelib/ncbistd.hpp>
#include <gui/core/algo.hpp>
#include <gui/core/plugin_utils.hpp>


BEGIN_NCBI_SCOPE


class CAlgoBlast_Base
{
public:
    virtual ~CAlgoBlast_Base() {}

    // internal handler for RunCommand(), called by derived classes
    void RunCommand(objects::CPluginMessage& msg);

protected:
    // standard BLAST options hook.  This is called by derived
    // classes GetInfo() functions to add the basic information for
    // local BLAST searches
    static void x_AddStandardArgs(objects::CPluginCommand& command);

};


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: blast_base.hpp,v $
 * Revision 1000.2  2004/04/12 19:27:15  gouriano
 * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
 *
 * Revision 1.3  2004/01/27 18:40:06  dicuccio
 * Code clean-up.  Renamed plugin classes to follow standard pattern
 *
 * Revision 1.2  2003/11/04 17:49:22  dicuccio
 * Changed calling parameters for plugins - pass CPluginMessage instead of paired
 * CPluginCommand/CPluginReply
 *
 * Revision 1.1  2003/10/23 16:23:04  dicuccio
 * Moved code from algo/blast to algo/align
 *
 * Revision 1.2  2003/09/29 19:28:01  dicuccio
 * Implemented variants of BLAST
 *
 * Revision 1.1  2003/09/25 17:41:10  dicuccio
 * Split BLAST plugin into three plugins, one each for BLASTn, BLASTp, and tBLASTn
 *
 * Revision 1.2  2003/08/22 15:47:46  dicuccio
 * Added 'objects::' where necessary
 *
 * Revision 1.1  2003/08/15 18:59:14  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */

#endif  // GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP