dll_register.cpp

来自「ncbi源码」· C++ 代码 · 共 180 行

/*
 * ===========================================================================
 * PRODUCTION $Log: dll_register.cpp,v $
 * PRODUCTION Revision 1000.3  2004/06/01 20:54:34  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.20
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: dll_register.cpp,v 1000.3 2004/06/01 20:54:34 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Clifford Clausen, Michael DiCuccio
 *
 * File Description:
 *    Plug-in definition file for net blast algorithm
 */

#include <ncbi_pch.hpp>
#include <gui/core/algo_factory.hpp>
#include <gui/core/dload_factory.hpp>
#include <gui/core/version.hpp>

// Alignment utility plugins
#include "align_merge.hpp"

// Global Alignment files
#include "wbplg_aligner.hpp"

// Spliced Alignment files
#include "wbplg_splign.hpp"

// Specialty Alignments
#include "mrna_to_neighbors.hpp"
#include "prot_to_neighbors.hpp"
#include "align_5prime.hpp"

// BLAST network interface
#include "net_blast_reqn.hpp"
#include "net_blast_reqx.hpp"
#include "net_blast_reqtx.hpp"
#include "net_blast_reqmega.hpp"
#include "net_blast_reqp.hpp"
#include "net_blast_reqtn.hpp"
#include "net_blast_reply.hpp"

// BLAST2Sequences files
#include "blastn.hpp"
#include "blastp.hpp"
#include "tblastx.hpp"
#include "blastx.hpp"
//#include "megablast.hpp"


USING_SCOPE(ncbi);
USING_SCOPE(objects);


//
// standard registration boilerplate
//

//DECLARE_ALGO_FACTORY(CPluginBlast_MegaBLAST);
DECLARE_ALGO_FACTORY(CAlgoPlugin_AlignMerge);
DECLARE_ALGO_FACTORY(CAlgoPlugin_Align5Prime);
DECLARE_ALGO_FACTORY(CAlgoPlugin_AlignMrnaToNeighbors);
DECLARE_ALGO_FACTORY(CAlgoPlugin_AlignProtToNeighbors);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BLASTn);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BLASTp);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BLASTx);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqmega);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqn);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqp);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqtn);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqtx);
DECLARE_ALGO_FACTORY(CAlgoPlugin_BlastReqx);
DECLARE_ALGO_FACTORY(CAlgoPlugin_NeedlemanWunsch);
DECLARE_ALGO_FACTORY(CAlgoPlugin_Splign);
DECLARE_ALGO_FACTORY(CAlgoPlugin_tBLASTx);
DECLARE_DATA_FACTORY(CDataPlugin_BlastReply);

BEGIN_PLUGIN_REGISTRATION
    //REGISTER_ALGO_PLUGIN(CPluginBlast_MegaBLAST);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_AlignMerge);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_Align5Prime);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_AlignMrnaToNeighbors);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_AlignProtToNeighbors);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BLASTn);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BLASTp);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BLASTx);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqmega);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqn);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqp);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqtn);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqtx);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_BlastReqx);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_NeedlemanWunsch);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_Splign);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_tBLASTx);
    REGISTER_DATA_PLUGIN(CDataPlugin_BlastReply);
END_PLUGIN_REGISTRATION



/*
 * ===========================================================================
 * $Log: dll_register.cpp,v $
 * Revision 1000.3  2004/06/01 20:54:34  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.20
 *
 * Revision 1.20  2004/05/21 22:27:46  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.19  2004/05/18 17:49:19  kapustin
 * Register Splign Plugin
 *
 * Revision 1.18  2004/01/27 18:40:10  dicuccio
 * Code clean-up.  Renamed plugin classes to follow standard pattern
 *
 * Revision 1.17  2003/11/17 16:32:57  clausen
 * Split request plugin into multiple plugins
 *
 * Revision 1.16  2003/10/31 17:32:09  clausen
 * Switched from passing scope to passing document
 *
 * Revision 1.15  2003/10/24 12:56:39  dicuccio
 * Fixed file overwrite - re-include other alignment plugins
 *
 * Revision 1.14  2003/10/24 12:49:21  dicuccio
 * Moved files from algo/net_blast
 *
 * Revision 1.7  2003/06/20 14:52:11  dicuccio
 * Revised plugin registration.  Made poll dialog a member of the plugin
 *
 * Revision 1.6  2003/06/13 12:08:51  clausen
 * Changed RID for reply to optional
 *
 * Revision 1.5  2003/05/19 13:39:43  dicuccio
 * Moved gui/core/plugin/ --> gui/plugin/.  Merged core libraries into
 * libgui_core
 *
 * Revision 1.4  2003/05/12 16:08:59  dicuccio
 * Make scope a hidden parameter
 *
 * Revision 1.3  2003/05/09 16:53:05  dicuccio
 * Comment out unimplemented API call (CPluginArg::SetHidden())
 *
 * Revision 1.2  2003/05/09 16:52:18  dicuccio
 * Converted CNetBlastReply from algorithm -> data loader (appears now in
 * file/open menu)
 *
 * Revision 1.1  2003/05/07 17:48:24  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */