prosite.hpp

来自「ncbi源码」· HPP 代码 · 共 84 行

/*
 * ===========================================================================
 * PRODUCTION $Log: prosite.hpp,v $
 * PRODUCTION Revision 1000.1  2004/04/12 19:29:55  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_PLUGINS_ALGO_BASIC___PROSITE__HPP
#define GUI_PLUGINS_ALGO_BASIC___PROSITE__HPP

/*  $Id: prosite.hpp,v 1000.1 2004/04/12 19:29:55 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Josh Cherry
 *
 * File Description:  Class for handling prosite-format pattern databases
 *
 */


#include <corelib/ncbistd.hpp>
#include "prosite_entry.hpp"


BEGIN_NCBI_SCOPE

class CProsite
{
public:
    /// Read prosite entries from a stream.
    static void ReadEntries(istream& input, vector<CPrositeEntry>& entries);
    /// Convert a prosite pattern to a perl-compatible regular expression.
    static string PSPatternToPCRE(const string& pat);
private:
    static string x_ElementConvert(const string& el);
};


END_NCBI_SCOPE



/*
 * ===========================================================================
 * $Log: prosite.hpp,v $
 * Revision 1000.1  2004/04/12 19:29:55  gouriano
 * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
 *
 * Revision 1.2  2004/01/27 18:38:08  dicuccio
 * Code clean-up.  Use standard names for plugins.  Removed unnecessary #includes
 *
 * Revision 1.1  2003/08/04 20:05:45  jcherry
 * Initial version
 *
 * ===========================================================================
 */


#endif   // GUI_PLUGINS_ALGO_BASIC___PROSITE__HPP