dll_register.cpp

来自「ncbi源码」· C++ 代码 · 共 245 行

/*
 * ===========================================================================
 * PRODUCTION $Log: dll_register.cpp,v $
 * PRODUCTION Revision 1000.3  2004/06/01 20:54:57  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.40
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: dll_register.cpp,v 1000.3 2004/06/01 20:54:57 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *    Plug-in definition file for intrinsic algorithms
 */

#include <ncbi_pch.hpp>
#include <gui/core/algo_factory.hpp>

#include "aacomp.hpp"
#include "calculate_pI.hpp"
#include "cdd_search.hpp"
#include "cpg_islands.hpp"
#include "dinuc.hpp"
#include "find_orfs.hpp"
#include "gc_content.hpp"
#include "nmer.hpp"
#include "nmer_repeats.hpp"
#include "pattern.hpp"
#include "pattern2.hpp"
#include "predict_antigen.hpp"
#include "predict_coiled_coil.hpp"
#include "predict_signal_seq.hpp"
#include "prosite_search.hpp"
#include "restriction_sites.hpp"
#include "select_feature.hpp"
#include "view_default.hpp"

USING_SCOPE(ncbi);
USING_SCOPE(objects);

 
DECLARE_ALGO_FACTORY(CAlgoPlugin_AAComp);
DECLARE_ALGO_FACTORY(CAlgoPlugin_CDDSearch);
DECLARE_ALGO_FACTORY(CAlgoPlugin_CalculatePI);
DECLARE_ALGO_FACTORY(CAlgoPlugin_CpGIslands);
DECLARE_ALGO_FACTORY(CAlgoPlugin_Dinuc);
DECLARE_ALGO_FACTORY(CAlgoPlugin_FindOrfs);
DECLARE_ALGO_FACTORY(CAlgoPlugin_GcContent);
DECLARE_ALGO_FACTORY(CAlgoPlugin_NamedPatterns);
DECLARE_ALGO_FACTORY(CAlgoPlugin_Nmer);
DECLARE_ALGO_FACTORY(CAlgoPlugin_NmerRepeats);
DECLARE_ALGO_FACTORY(CAlgoPlugin_Pattern);
DECLARE_ALGO_FACTORY(CAlgoPlugin_PredictAntigen);
DECLARE_ALGO_FACTORY(CAlgoPlugin_PredictCoiledCoil);
DECLARE_ALGO_FACTORY(CAlgoPlugin_PredictSignalSeq);
DECLARE_ALGO_FACTORY(CAlgoPlugin_PrositeSearch);
DECLARE_ALGO_FACTORY(CAlgoPlugin_RestrictionSites);
DECLARE_ALGO_FACTORY(CAlgoPlugin_SelectFeature);
DECLARE_ALGO_FACTORY(CAlgoPlugin_ViewDefault);

BEGIN_PLUGIN_REGISTRATION
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_AAComp);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_CDDSearch);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_CalculatePI);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_CpGIslands);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_Dinuc);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_FindOrfs);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_GcContent);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_NamedPatterns);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_Nmer);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_NmerRepeats);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_Pattern);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_PredictAntigen);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_PredictCoiledCoil);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_PredictSignalSeq);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_PrositeSearch);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_RestrictionSites);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_SelectFeature);
    REGISTER_ALGO_PLUGIN(CAlgoPlugin_ViewDefault);
END_PLUGIN_REGISTRATION



/*
 * ===========================================================================
 * $Log: dll_register.cpp,v $
 * Revision 1000.3  2004/06/01 20:54:57  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.40
 *
 * Revision 1.40  2004/05/21 22:27:46  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.39  2004/03/15 16:04:56  jcherry
 * Added view_default
 *
 * Revision 1.38  2004/03/05 16:13:03  dicuccio
 * Disable Cn3D launcher pending move out of algo_basic
 *
 * Revision 1.37  2004/03/04 21:16:21  jcherry
 * Added Cn3D launcher
 *
 * Revision 1.36  2004/01/27 18:37:40  dicuccio
 * Code clean-up.  Use standard names for plugins.  Removed unnecessary #includes
 *
 * Revision 1.35  2003/12/30 15:24:14  jcherry
 * Removed CPrimer3Web plugin
 *
 * Revision 1.34  2003/12/17 17:37:35  jcherry
 * Added n-mer repeat finding
 *
 * Revision 1.33  2003/12/16 22:25:09  jcherry
 * Added plugin for searching against patterns loaded from file
 *
 * Revision 1.32  2003/11/03 20:21:10  jcherry
 * Moved news to algo/init
 *
 * Revision 1.31  2003/11/03 20:06:37  jcherry
 * Added "news" plugin
 *
 * Revision 1.30  2003/10/16 12:56:35  dicuccio
 * Added CDD Search facility.  Cleaned up dll_register.cpp
 *
 * Revision 1.29  2003/10/15 18:16:15  jcherry
 * Added CPrimer3Web
 *
 * Revision 1.28  2003/09/10 15:33:38  jcherry
 * Added signal sequence prediction
 *
 * Revision 1.27  2003/09/08 16:17:43  jcherry
 * Added coiled coil prediction
 *
 * Revision 1.26  2003/09/02 14:55:53  jcherry
 * Added prediction of antigenic determinants in proteins
 *
 * Revision 1.25  2003/08/14 18:00:04  jcherry
 * Added ORF finding
 *
 * Revision 1.24  2003/08/12 18:53:39  jcherry
 * Added restriction site searching
 *
 * Revision 1.23  2003/08/04 20:07:48  jcherry
 * Added prosite search
 *
 * Revision 1.22  2003/07/28 17:27:38  jcherry
 * Removed 'external' to a different project
 *
 * Revision 1.21  2003/07/16 17:20:23  johnson
 * added cpg island plugin
 *
 * Revision 1.20  2003/07/03 19:15:17  jcherry
 * Replaced 'subseq' (fixed string finding) with
 * 'pattern' (regular expression finding).
 *
 * Revision 1.19  2003/06/25 20:16:11  jcherry
 * Added stuff for pI and aa composition
 *
 * Revision 1.18  2003/06/20 14:52:36  dicuccio
 * Revised plugin registration - moved GetInfo() into the plugin handler
 *
 * Revision 1.17  2003/06/19 19:13:41  jcherry
 * Added stuff for running exteral executables ('extern')
 *
 * Revision 1.15  2003/06/09 17:32:15  jcherry
 * Added stuff for CDinuc and CNmer
 * Moved CGcContent into submenu "Composition", along with the above
 *
 * Revision 1.14  2003/05/19 13:39:07  dicuccio
 * Moved gui/core/plugin/ --> gui/plugin/.  Merged core libraries into libgui_core
 *
 * Revision 1.13  2003/05/09 17:03:43  dicuccio
 * Undo spurious commit
 *
 * Revision 1.12  2003/05/09 16:54:32  dicuccio
 * Reorganized registration.  Removed empty document creator - unnecessary
 *
 * Revision 1.11  2003/04/24 16:38:00  dicuccio
 * Updated to reflect changes in plugin API
 *
 * Revision 1.10  2003/03/25 13:47:42  dicuccio
 * Reimplemented to take one required argument instead of three optional ones -
 * makes standard processing easier
 *
 * Revision 1.9  2003/02/25 14:45:16  dicuccio
 * Changed accessors to match changes in plugin arguments accessors
 *
 * Revision 1.8  2003/02/24 13:03:15  dicuccio
 * Renamed classes in plugin spec:
 *     CArgSeg --> CPluginArgSet
 *     CArgument --> CPluginArg
 *     CPluginArgs --> CPluginCommand
 *     CPluginCommands --> CPluginCommandSet
 *
 * Revision 1.7  2003/02/21 17:16:52  dicuccio
 * Fixed compilation errors related to changes in plugin architecture
 *
 * Revision 1.6  2003/02/20 19:49:53  dicuccio
 * Created new plugin architecture, based on ASN.1 spec.  Moved GBENCH frameowrk
 * over to use new plugin architecture.
 *
 * Revision 1.5  2003/01/13 13:10:05  dicuccio
 * Namespace clean-up.  Retired namespace gui -> converted all to namespace
 * ncbi.  Moved all FLUID-generated code into namespace ncbi.
 *
 * Revision 1.4  2003/01/08 14:48:28  dicuccio
 * Updated to match new type specification API
 *
 * Revision 1.3  2002/12/19 18:16:32  dicuccio
 * Twiddled includes to make MSVC happy.
 *
 * Revision 1.2  2002/11/07 18:27:55  dicuccio
 * Cleaned up plug-in registration: converted to use macros from
 * 'algo_plugin.hpp'
 *
 * Revision 1.1  2002/11/05 20:59:20  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */