shi_reader.hpp

来自「ncbi源码」· HPP 代码 · 共 120 行

/*
 * ===========================================================================
 * PRODUCTION $Log: shi_reader.hpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 21:01:51  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
 * PRODUCTION
 * ===========================================================================
 */

#ifndef GUI_CORE_DOC_BASIC___SHI_READER__HPP
#define GUI_CORE_DOC_BASIC___SHI_READER__HPP

/*  $Id: shi_reader.hpp,v 1000.1 2004/06/01 21:01:51 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vladimir Tereshkov
 *
 * File Description:
 *    CShiReader - taxplot file format loader
 */

#include <corelib/ncbistd.hpp>
#include <gui/core/doc_loader.hpp>
#include <gui/plugin/MessageStatus.hpp>
#include <gui/plugin/PluginInfo.hpp>
#include <objmgr/scope.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/submit/Seq_submit.hpp>

#include "ishi_cache.hpp"


BEGIN_NCBI_SCOPE

class IDocument;
class CObjectInfo;

class CShiReader : public CDocLoader<CShiReader>
{
public:
    CShiReader();
    ~CShiReader();

    static void GetInfo(objects::CPluginInfo& info);
    
    // virtual hook: load a document
    void Load(objects::CPluginMessage& msg);
};

struct SOneShiRecord {     
    int m_Nqugi;
    int m_Dagi;
    int m_Taxid;
    int m_Score;
    int m_Orgclass;
    int m_Symmet;
    int m_Chromosome;
    int m_Pdb;
    int m_Gi;
};


END_NCBI_SCOPE

/*
 * ===========================================================================
 * $Log: shi_reader.hpp,v $
 * Revision 1000.1  2004/06/01 21:01:51  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
 *
 * Revision 1.3  2004/05/20 21:39:06  tereshko
 * Change path to ishi_cache.hpp
 *
 * Revision 1.2  2004/01/28 16:00:56  tereshko
 * Added current gi extraction, loosen filter criteria
 *
 * Revision 1.1  2004/01/21 16:24:47  tereshko
 * CShiReader moved in
 *
 * Revision 1.2  2004/01/21 14:16:29  dicuccio
 * Adjusted API to be more coding standard compliant.
 *
 * Revision 1.1  2004/01/14 16:35:59  tereshko
 * CShiReader data plugin
 *
 * Revision 1.1  2003/12/09 00:20:09  jcherry
 * Initial version
 *
 * ===========================================================================
 */

#endif  // GUI_CORE_DOC_BASIC___SHI_READER__HPP