view_taxplot_ds.cpp

来自「ncbi源码」· C++ 代码 · 共 110 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_taxplot_ds.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 21:02:02  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.5
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_taxplot_ds.cpp,v 1000.1 2004/06/01 21:02:02 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */


#include <ncbi_pch.hpp>
#include "view_taxplot_ds.hpp"

#include <memory>

BEGIN_NCBI_SCOPE

CTaxplotDataSource::CTaxplotDataSource(CShiReaderCache * cache, Int4 tax1, Int4 tax2, Int4 tax3):CTaxplot3dDataSource()
{
    const IShiCache::TIdVector & giVect = cache->GetData();

    // init datasource
    clear();

    // fill it from cache
    for (IShiCache::TIdVector::const_iterator it=giVect.begin(); it!=giVect.end(); it++){
        IShiCache::TScoreMap::const_iterator itm;
        int score1 = ((itm=it->find(tax1))!=it->end()) ? itm->second : 0;
        int score2 = ((itm=it->find(tax2))!=it->end()) ? itm->second : 0;
        int score3 = ((itm=it->find(tax3))!=it->end()) ? itm->second : 0;
        int currgi = ((itm=it->find(0))!=it->end())    ? itm->second : 0;

        if ((score1!=score2!=score3) &&
           ((score1!=0 && score2!=0) || (score1!=0 && score3!=0) || (score2!=0 && score3!=0))){ 
            CGraph3DVertex<float, float> * newVertex = new CGraph3DVertex<float, float>(score1, score2, score3, currgi);
            if      (score1!=0 && score2!=0 && score3!=0)   newVertex->setRGB(0, 0.5, 0);
            else                                            newVertex->setRGB(0, 0, 0.5);
            addVertex(newVertex);						        
        }
    }
    normalizeAll(); 
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: view_taxplot_ds.cpp,v $
 * Revision 1000.1  2004/06/01 21:02:02  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.5
 *
 * Revision 1.5  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.4  2004/01/28 16:01:42  tereshko
 * Changed datasource initialization
 *
 * Revision 1.3  2004/01/21 14:17:04  dicuccio
 * Adjusted API to be more coding standard compliant.  Don't use auto_ptr<> for
 * local buffers
 *
 * Revision 1.2  2004/01/21 14:04:01  ucko
 * +<memory> for auto_ptr<>
 *
 * Revision 1.1  2004/01/14 16:37:08  tereshko
 * Taxplot viewer, initial revision
 *
 * Revision 1.2  2003/09/24 18:26:47  dicuccio
 * Large clean-ups to alignment viewers.  Reimplemented data sources and alignment
 * generation mechanism to be more generic.
 *
 * Revision 1.1  2003/09/12 16:03:20  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */