view_taxplot.cpp

来自「ncbi源码」· C++ 代码 · 共 256 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_taxplot.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 21:01:53  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_taxplot.cpp,v 1000.1 2004/06/01 21:01:53 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *    User-modifiable implementation file for extension of Taxplot Viewer
 *    
 */

#include <ncbi_pch.hpp>
#include "view_taxplot.hpp"
#include "view_taxplot_ds.hpp"

#include <gui/types.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginValue.hpp>
#include <objmgr/scope.hpp>
#include <serial/typeinfo.hpp>
#include <objmgr/util/sequence.hpp>
#include <gui/core/doc_manager.hpp>
#include <gui/utils/message_box.hpp>

BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

// We include the generated _.cpp file here.  This avoids a nasty bug in some
// versions of gcc in which inline functions are not intantiated.
#include "view_taxplot_.cpp"

// temporary...
int    xTax,   yTax,   zTax;
string labelx, labely, labelz;

// defines : should be obtained automatically
Fl_Menu_Item taxonomy[] = {
    {"A. gambiae str. PEST",	0,0, (void*)"180454"},
    {"A. thaliana (thale cress)",0,0,(void*)"3702"},
    {"C. elegans",	0,0,(void*)"6239"},
    {"C. parvum",	0,0,(void*)"5807"},
    {"Candida albicans",	0,0,(void*)"5476"},
    {"D. melanogaster (fruit fly)",	0,0,(void*)"7227"},
    {"E. cuniculi",	0,0,(void*)"6035"},
    {"E. histolytica",0,0,(void*)"5759"},
    {"G. lamblia ATCC 50803",	0,0,(void*)"184922"},
    {"Homo sapiens (human)",	0,0,(void*)"9606"},
    {"Leishmania major",	0,0,(void*)"5664"},
    {"M. grisea 70-15",	0,0,(void*)"242507"},
    {"Mus musculus (house mouse)",0,0,(void*)"10090"},
    {"Neurospora crassa",	0,0,(void*)"5141"},
    {"P. falciparum 3D7",	0,0,(void*)"36329"},
    {"P. yoelii yoelii",	0,0,(void*)"73239"},
    {"Rattus norvegicus",	0,0,(void*)"10116"},
    {"S. cerevisiae",	0,0,(void*)"4932"},  
    {"S. pombe (fission yeast)",	0,0,(void*)"4896"},
    {"Trypanosoma brucei",	0,0,(void*)"5691"},
    {"Trypanosoma cruzi",	0,0,(void*)"5693"},
    {0}
};

void cb_Tax1(Fl_Widget * widget, void * data)
{
    Fl_Menu_* mw = (Fl_Menu_*)widget;
    const   Fl_Menu_Item* m = mw->mvalue();
    xTax      = NStr::StringToInt(string((char*)m->user_data()));    
    labelx    = m->label();
    if(data) ((CTaxplotView*)data)->OnDocumentChanged();;
}
void cb_Tax2(Fl_Widget * widget, void * data)
{
    Fl_Menu_* mw = (Fl_Menu_*)widget;
    const   Fl_Menu_Item* m = mw->mvalue();  
    yTax      = NStr::StringToInt(string((char*)m->user_data()));
    labely = m->label();    
    if(data) ((CTaxplotView*)data)->OnDocumentChanged();;
}

void cb_Tax3(Fl_Widget * widget, void * data)
{
    Fl_Menu_* mw = (Fl_Menu_*)widget;
    const   Fl_Menu_Item* m = mw->mvalue();  
    zTax      = NStr::StringToInt(string((char*)m->user_data()));
    labelz = m->label();
    if(data) ((CTaxplotView*)data)->OnDocumentChanged();;
}

//
// standard plugin announcement boilerplate
//
void CTaxplotView::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CTaxplotView",
                 "Taxplot Viewer",
                 "Taxplot Viewer", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);
    
    // only document            
    //args.AddArgument("document", "Document", CPluginArg::eDocument);        
    args.AddArgument("taxplot", "Taxplot", CShiReaderCache::GetTypeInfo());
}


CTaxplotView::CTaxplotView(const CPluginMessage& msg, const string& pool_name)
    : CView()
{
    // main window
    m_Window.reset(x_CreateWindow());
    
    // getting document
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    const CPluginArg& arg = args["taxplot"];
    const IDocument* doc = arg.GetDocument();
    //IDocument* doc = const_cast<IDocument*> (&args["document"].AsDocument());

    const CShiReaderCache * cache   = dynamic_cast<const CShiReaderCache*>(&args["taxplot"].AsObject());
    
    // setting view document
    if (doc)  x_SetDocument(*doc);       

    // comboboxes
    m_xCombo->menu(taxonomy); m_xCombo->value(5);
    m_yCombo->menu(taxonomy); m_yCombo->value(2);
    m_zCombo->menu(taxonomy); m_zCombo->value(17);

    // events    
    m_xCombo->callback(cb_Tax1,(void*)this);  
    m_yCombo->callback(cb_Tax2,(void*)this);  
    m_zCombo->callback(cb_Tax3,(void*)this);

    // setting initial values
    cb_Tax1(m_xCombo, NULL);  
    cb_Tax2(m_yCombo, NULL);  
    cb_Tax3(m_zCombo, NULL); 
    
    
}

void CTaxplotView::OnViewCreated(IView& view)
{       
}


void CTaxplotView::OnDocumentChanged()
{
    if (m_Document){    
        SetTitle(m_Document->GetShortTitle() + ": " + GetTitle());
    
    
        CShiReaderCache * cache   = dynamic_cast<CShiReaderCache*>(m_Document->GetObject());
        if (cache) {
            CTaxplotDataSource * ds = new CTaxplotDataSource(cache,  xTax, yTax, zTax);
            ds->xLabel() = labelx; ds->yLabel() = labely; ds->zLabel() = labelz;                
            m_DataSource.Reset(ds);  
            m_AlnInfo->SetDataSource(m_DataSource);
        }
        else {
            throw runtime_error("No valid Taxplot data found in this document");            
        }
    }
}

void CTaxplotView::x_OnHelp()
{
}

const string& CTaxplotView::GetTitle(void) const
{
    static string s_str("Taxplot View");
    return s_str;
}

void CTaxplotView::x_OnFileClose()
{
    Hide();
}




END_NCBI_SCOPE



/*
 * ===========================================================================
 * $Log: view_taxplot.cpp,v $
 * Revision 1000.1  2004/06/01 21:01:53  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
 *
 * Revision 1.7  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.6  2004/05/20 21:40:46  tereshko
 * Argument retrieval changed to uniform way with identifier taxplot
 *
 * Revision 1.5  2004/04/07 13:05:11  dicuccio
 * Changed view API - require CPluginMessage instead of CPluginArgSet
 *
 * Revision 1.4  2004/01/15 21:36:57  tereshko
 * Updates to UI, event hooks
 *
 * Revision 1.3  2004/01/15 17:01:09  tereshko
 * Fix for 64 bit compiler
 *
 * Revision 1.2  2004/01/14 23:22:42  tereshko
 * Removed unused pointer
 *
 * Revision 1.1  2004/01/14 16:37:05  tereshko
 * Taxplot viewer, initial revision
 *
 * ===========================================================================
 */