view_alntable.cpp

来自「ncbi源码」· C++ 代码 · 共 320 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_alntable.cpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 21:01:08  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
 * PRODUCTION
 * ===========================================================================
 */


/*  $Id: view_alntable.cpp,v 1000.2 2004/06/01 21:01:08 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <ncbi_pch.hpp>
#include "view_alntable.hpp"
#include "visible_range_dlg.hpp"
#include "preference_dlg.hpp"
#include <gui/types.hpp>
#include <gui/core/doc_manager.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginValue.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_vector.hpp>
#include <serial/typeinfo.hpp>
#include <objmgr/util/sequence.hpp>


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

#include "view_alntable_.cpp"


void CViewAlnTable::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CViewAlnTable", "Alignment Table",
                 "Tabular list of alignments", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);
    args.AddArgument("aligns", "Alignments to display",
                     CSeq_align::GetTypeInfo(),
                     CPluginArg::TData::e_Array);
}



CViewAlnTable::CViewAlnTable(const CPluginMessage& msg, 
                             const string& pool_name)
    : CView()
{
    m_Window.reset(x_CreateWindow());

    // create our dynamic menu managers
    m_AlgoMenuMgr.reset(new CAlgoMenuMgr(m_Menu, "Tools", m_AlnTable));
    m_ViewMenuMgr.reset(new CViewMenuMgr(m_Menu, "View", m_AlnTable, pool_name));

    // decode the argument
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    plugin_args::TAlignList aligns;
    GetArgValue(args["aligns"], aligns);

    list< CConstRef<CSeq_align> > align_list;
    CConstRef<IDocument> doc_ref;
    ITERATE (plugin_args::TAlignList, iter, aligns) {
        doc_ref = iter->first;
        align_list.push_back(iter->second);
    }

    x_SetDocument(*doc_ref);
    m_DataSource.Reset(new CAlnTableDS(doc_ref->GetScope(), align_list));
    m_AlnTable->SetDataSource(*m_DataSource);
}


void CViewAlnTable::OnDocumentChanged()
{
    x_Update();
}


void CViewAlnTable::x_Update()
{
    SetTitle(GetTitle());
    m_StatusBar->SetMessage("No alignments.");

    if ( !m_AlnTable  || !GetDocument() ) {
        return;
    }

    m_AlnTable->Update();

    // prepare our status bar message
    x_UpdateStatusMessage();

    // update our dynamic menus
    x_UpdateDynMenus();
}


void CViewAlnTable::x_UpdateStatusMessage()
{
    //
    // prepare our status bar message
    //
    string status_msg;

    int total_aligns = m_AlnTable->GetRows();
    status_msg = NStr::IntToString(total_aligns) + " alignment";
    if (total_aligns != 1) {
        status_msg += "s";
    }

    m_StatusBar->SetMessage(status_msg);
}


void CViewAlnTable::x_UpdateDynMenus()
{
    m_ViewMenuMgr->Clear();
    m_AlgoMenuMgr->Clear();

    m_ViewMenuMgr->AddActiveViews(GetDocument());
    m_ViewMenuMgr->AddNewViews();
    m_AlgoMenuMgr->AddAlgoMenu();
}
    

const string& CViewAlnTable::GetTitle() const
{
    static string s_str("Alignment Table View");
    return s_str;
}


END_NCBI_SCOPE

/*
 * ===========================================================================
 * $Log: view_alntable.cpp,v $
 * Revision 1000.2  2004/06/01 21:01:08  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
 *
 * Revision 1.3  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.2  2004/04/16 14:47:27  dicuccio
 * Enabled alignment table view.  Use appropriate ISelection interface for dynamic menus
 *
 * Revision 1.1  2004/04/07 12:01:35  dicuccio
 * Initial revision
 *
 * Revision 1.34  2004/03/11 17:47:22  dicuccio
 * Use TSeqRange instead of TRange
 *
 * Revision 1.33  2004/01/27 18:45:35  dicuccio
 * Added missing header files
 *
 * Revision 1.32  2004/01/20 18:17:53  dicuccio
 * Changed to match new API in CTablePanel
 *
 * Revision 1.31  2004/01/07 18:51:46  dicuccio
 * Guard against self-assignment in OnSelectionsChanged()
 *
 * Revision 1.30  2003/12/30 15:03:56  dicuccio
 * Added ability to pass selections into feature table
 *
 * Revision 1.29  2003/12/24 17:23:49  friedman
 * Changed x_UpdateDynMenus to pass in visible range seqloc instead of seqid.
 *
 * Revision 1.28  2003/12/24 16:33:18  friedman
 * Added posting visible range change message.
 *
 * Revision 1.27  2003/12/22 19:32:24  dicuccio
 * Lots of code clean-up.  Changed to match new APIs in IView.  Added first pass
 * at processing selections (not entirely working)
 *
 * Revision 1.26  2003/12/22 18:15:08  friedman
 * Added various visible range methods and the selection of a method
 * through the preference menu selection and dialog.
 *
 * Revision 1.25  2003/12/03 22:24:12  friedman
 * Added changing visible range of the table.
 *
 * Revision 1.24  2003/11/26 19:45:39  friedman
 * Changed CSeq_id plugn arg to CSeq_loc. Set visible range based on seq loc passed in.
 *
 * Revision 1.23  2003/11/24 15:45:45  dicuccio
 * Renamed CVersion to CPluginVersion
 *
 * Revision 1.22  2003/11/20 21:50:39  jcherry
 * Set status message *after* updating feature table (fixes reporting of
 * number of features)
 *
 * Revision 1.21  2003/11/20 16:54:33  ucko
 * OnVisibleRangeChanged: don't try to introduce const in static_cast<>.
 *
 * Revision 1.20  2003/11/19 20:45:28  friedman
 * Added handling a visible range change event
 *
 * Revision 1.19  2003/11/04 12:51:28  friedman
 * Added event message pool callbacks for the document all-view message pool.
 *
 * Revision 1.18  2003/10/27 20:03:42  dicuccio
 * Rearranged Update() to be consistent
 *
 * Revision 1.17  2003/10/07 13:47:07  dicuccio
 * Renamed CPluginURL* to CPluginValue*
 *
 * Revision 1.16  2003/09/04 14:54:23  dicuccio
 * Use IDocument instead of CDocument.  Changed APIs to match changes in IView
 *
 * Revision 1.15  2003/07/31 17:04:34  dicuccio
 * Changed type stored by feature table view - use CMappedFeat instead of CFeature
 * (less memory consumption)
 *
 * Revision 1.14  2003/07/22 15:32:17  dicuccio
 * Changed to make use of new API in plugin_utils.hpp - GetArgValue()
 *
 * Revision 1.13  2003/06/26 15:33:41  dicuccio
 * Moved GetURLValue() from PluginURL.hpp to plugin_utils.hpp.  Fixed compilation
 * errors relating to missing #includes
 *
 * Revision 1.12  2003/06/25 17:03:01  dicuccio
 * Split CPluginHandle into a handle (pointer-to-implementation) and
 * implementation file.  Lots of #include file clean-ups.
 *
 * Revision 1.11  2003/06/20 14:53:53  dicuccio
 * Revised plugin registration - moved GetInfo() into the plugin handler
 *
 * Revision 1.10  2003/06/02 16:06:24  dicuccio
 * Rearranged src/objects/ subtree.  This includes the following shifts:
 *     - src/objects/asn2asn --> arc/app/asn2asn
 *     - src/objects/testmedline --> src/objects/ncbimime/test
 *     - src/objects/objmgr --> src/objmgr
 *     - src/objects/util --> src/objmgr/util
 *     - src/objects/alnmgr --> src/objtools/alnmgr
 *     - src/objects/flat --> src/objtools/flat
 *     - src/objects/validator --> src/objtools/validator
 *     - src/objects/cddalignview --> src/objtools/cddalignview
 * In addition, libseq now includes six of the objects/seq... libs, and libmmdb
 * replaces the three libmmdb? libs.
 *
 * Revision 1.9  2003/05/19 13:46:51  dicuccio
 * Moved gui/core/plugin/ --> gui/plugin/.  Merged core libraries into
 * libgui_core.so
 *
 * Revision 1.8  2003/04/29 14:56:16  dicuccio
 * Reworked FLUID-generated code: better memory management, more explicit control
 * over the constructor
 *
 * Revision 1.7  2003/04/24 16:42:52  dicuccio
 * Updated to reflect changes in IDocument, plugin API
 *
 * Revision 1.6  2003/03/17 14:54:15  dicuccio
 * Changed base class CView - added member variable for FLTK gui component for
 * child windows, which is now maintained via an auto_ptr<>.  Eliminated
 * Show()/Hide() as a pure virtual requirement.
 *
 * Revision 1.5  2003/03/03 14:58:56  dicuccio
 * Changed to use visible range from the base class.  Added an explicit setter for
 * the visible range
 *
 * Revision 1.4  2003/01/13 13:10:09  dicuccio
 * Namespace clean-up.  Retired namespace gui -> converted all to namespace ncbi.
 * Moved all FLUID-generated code into namespace ncbi.
 *
 * Revision 1.3  2003/01/08 14:58:47  dicuccio
 * Major overhaul.  Added column selection dialog to base class - moved out of
 * this class.  Added ability to sort columns based on menu selections.  Added
 * ability to filter features based on a wide range of criteria.
 *
 * Revision 1.2  2002/12/31 16:16:27  dicuccio
 * Fixed odd compiler error in MSVC release builds - ambiguous '&&' operator
 *
 * Revision 1.1  2002/12/30 18:49:41  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */