header_editor.cpp

来自「ncbi源码」· C++ 代码 · 共 225 行

/*
 * ===========================================================================
 * PRODUCTION $Log: header_editor.cpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 21:02:16  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.4
 * PRODUCTION
 * ===========================================================================
 */

/*
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software / database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software / database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Lou Friedman
 *
 * File Description:
 *    Implementaion of CLocusEntryForm, for locus editing, CDefinEntryForm,
 *      for definition editing.
 *
 */


#include <ncbi_pch.hpp>
#include "header_editor.hpp"

#include <gui/dialogs/entry_form/table.hpp>

#include <serial/iterator.hpp>

#include <objects/seq/Bioseq.hpp>
#include <objects/seq/MolInfo.hpp>
#include <objects/seq/Seq_inst.hpp>

BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

SMenuEntryInfo SMolinfoBimolMapEntries[] = {
    { " ",                     0 }, 
    { "Genomic DNA or RNA",    1 }, 
    { "Precursor RNA",         2 }, 
    { "mRNA [cDNA]",           3 }, 
    { "Ribosomal RNA",         4 }, 
    { "Transfer RNA",          5 }, 
    { "Small nuclear RNA",     6 }, 
    { "Small cytoplasmic RNA", 7 }, 
    { "Peptide",               8 }, 
    { "Other - Genetic",       9 }, 
    { "Genomic - mRNA",       10 }, 
    { "cRNA",                 11 }, 
    { "Small nucleolar RNA",  12 }, 
    { "Transcribed RNA",      13 }, 
    { "Other",               255 }, 
    { 0,                       0 }
};

CEntryFormMenu SMolinfoBimolMenu(SMolinfoBimolMapEntries);

SMenuEntryInfo SMolinfoTechMapEntries[] = {
    { " ",                     0 },
    { "Standard",              1 },
    { "EST",                   2 },
    { "STS",                   3 },
    { "Survey",                4 },
    { "Genetic Map",           5 },
    { "Physical Map",          6 },
    { "Derived",               7 },
    { "Concept - Trans",       8 },
    { "Seq - Pept",            9 },
    { "Both",                 10 },
    { "Seq - Pept - Overlap", 11 },
    { "Seq - Pept - Homol",   12 },
    { "Concept - Trans - A",  13 },
    { "HTGS 0",               18 },
    { "HTGS 1",               14 },
    { "HTGS 2",               15 },
    { "HTGS 3",               16 },
    { "FLI_cDNA",             17 },
    { "HTC",                  19 },
    { "WGS",                  20 },
    { "Other:",              255 },
    { 0,                       0 }
};

CEntryFormMenu SMolinfoTechMenu(SMolinfoTechMapEntries);

SMenuEntryInfo MolinfoCompleteMapEntries [] = {
    { " ",         0 },
    { "Complete",  1 },
    { "Partial",   2 },
    { "No Left",   3 },
    { "No Right",  4 },
    { "No Ends",   5 },
    { "Other",   255 },
    { 0,           0 }
};

CEntryFormMenu SMolinfoCompleteMenu(SMolinfoTechMapEntries);

SMenuEntryInfo MolClassMapEntries [] = {
    { " ",          CSeq_inst::eMol_not_set },
    { "DNA",        CSeq_inst::eMol_dna     },
    { "RNA",        CSeq_inst::eMol_rna     },
    { "Protein",    CSeq_inst::eMol_aa      },
    { "Nucleotide", CSeq_inst::eMol_na      },
    { "Other",      CSeq_inst::eMol_other   },
    { 0,            0                       }
};

CEntryFormMenu SMolClassMenu(MolClassMapEntries);

SMenuEntryInfo TopologyMapEntries [] = {
    { " ",        CSeq_inst::eTopology_not_set  },
    { "Linear",   CSeq_inst::eTopology_linear   },
    { "Circular", CSeq_inst::eTopology_circular },
    { "Tandem",   CSeq_inst::eTopology_tandem   },
    { "Other",    255                           },
    { 0,          0                             }
};

CEntryFormMenu STolpologyMenu(TopologyMapEntries);

SMenuEntryInfo StrandMapEntires [] = {
    { " ",      CSeq_inst::eStrand_not_set },
    { "Single", CSeq_inst::eStrand_ss      },
    { "Double", CSeq_inst::eStrand_ds      },
    { "Mixed",  CSeq_inst::eStrand_mixed   },
    { "Other",  CSeq_inst::eStrand_other   },
    { 0,        0                          }
};

CEntryFormMenu SStrandMenu(StrandMapEntires);

CLocusEntryForm::CLocusEntryForm(CParagraph* p) 
    : CGenbankEntryForm(p)
{
    SetTitle("Locus");
    auto_ptr<CEntryFormTable> t
        (new CEntryFormTable(GetFormWidget()->GetFormWidth(), 5));
    
    const CMolInfo* mi = dynamic_cast<const CMolInfo*>(p->topic());
    
    int bimol    = CMolInfo::eBiomol_unknown;
    int complete = CMolInfo::eCompleteness_unknown;
    int tech     = CMolInfo::eTech_unknown;

    if (mi) {
        bimol      = mi->GetBiomol();
        complete   = mi->GetCompleteness();
        tech       = mi->GetTech();
    }

    m_Molecule     = t->AddMenuRow("Molecule", SMolinfoBimolMenu, bimol);
    m_Completeness = t->AddMenuRow("Completeness", SMolinfoCompleteMenu, 
                                    complete);
    m_Techniuqe    = t->AddMenuRow("Techniuqe", SMolinfoTechMenu, tech);

    /*
    const CSeq_inst& inst = seq->GetInst();

    m_Class        = t->AddMenuRow("Class", SMolClassMenu, inst.GetMol());
    m_Topology     = t->AddMenuRow("Topology", STolpologyMenu, 
                                    inst.GetTopology());

    CSeq_inst::EStrand strand = CSeq_inst::eStrand_not_set;
    if (inst.IsSetStrand()) {
        strand = inst.GetStrand();
    }
    m_Strand       = t->AddMenuRow("Strand",  SStrandMenu, strand);
    */
    t->End();
    AddEditWidget(t.release());
}

CLocusEntryForm::~CLocusEntryForm()
{
}


CDefinEntryForm::CDefinEntryForm(CParagraph* p)
    : CGenbankEntryForm(p)
{
    SetTitle("Definition");
    auto_ptr<CEntryFormTable> t
        (new CEntryFormTable(GetFormWidget()->GetFormWidth(), 5));

    // NOTE: flat file generator gets the difinition string from
    //  sequence::GetTtitle. Instead of recreating the definition
    //  string by calling GetTitle, I am gleaning the string from
    //  the buffer. When saving the string, it will be saved in 
    //  the Bioseq->SeqDesc->title, which may have to be created. 
    m_Defin = t->AddInputRow("Definition", p->buffer()->substr(12).c_str());

    t->End();
    AddEditWidget(t.release());
}

CDefinEntryForm::~CDefinEntryForm()
{
}

               
END_NCBI_SCOPE