view_genbank.cpp

来自「ncbi源码」· C++ 代码 · 共 260 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_genbank.cpp,v $
 * PRODUCTION Revision 1000.5  2004/06/01 21:02:48  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_genbank.cpp,v 1000.5 2004/06/01 21:02:48 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *    User-modifiable implementation file for extension of basic text viewer
 */


#include <ncbi_pch.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginInfo.hpp>
#include <gui/plugin/PluginValue.hpp>

#include <objects/seq/Bioseq.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objmgr/util/sequence.hpp>
#include <objtools/format/flat_file_generator.hpp>

#include <serial/serial.hpp>
#include <serial/objostrasn.hpp>

#include "genbank_ff_formatter.hpp"
#include "view_genbank.hpp"
#include "paragraph.hpp"


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

#include "view_genbank_.cpp"


void CViewGenbank::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CViewGenbank", "Text/Flat-File View",
                 "GenBank Flat-File Text Viewer", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);
    args.AddArgument("id", "Seq-id of the record we wish to display",
                     CSeq_id::GetTypeInfo());
}


CViewGenbank::CViewGenbank(const CPluginMessage& msg, const string& pool_name)
    : CView()
    , m_CurrentFont(FL_COURIER)
    , m_CurrentFontSize(12)
{
    m_Window.reset(x_CreateWindow());

    m_TextSize->value(1);
    m_TextFont->value(2);

    // create our view menu manager
    m_ViewMenuMgr.reset(new CViewMenuMgr(m_Menu, "View", this, pool_name));

    // decode the argument
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    const CPluginArg& arg = args["id"];
    const IDocument* doc = arg.GetDocument();
    const CSeq_id* id =
        dynamic_cast<const CSeq_id*> (arg.GetObject());

    // assign to our core components
    if (doc  &&  id) {
        x_SetDocument(*doc);
        m_SeqId.Reset(id);
    }
}


void CViewGenbank::OnDocumentChanged()
{
    // Clear the m_Editor scroll widget
    m_EditPack->clear();

    CBioseq_Handle handle =
        m_Document->GetScope().GetBioseqHandle(*m_SeqId);
    if (handle) {
        // Genbank format
        CFlatFileGenerator ffg;
        CRef<CGenbankEditOStream> os(new CGenbankEditOStream(this));
        ffg.Generate(handle.GetParentEntry(), *os);
    }

    // retrieve a nice title
    SetTitle(x_GetTitle(handle));
    m_Window->redraw();

    if ( !GetSelBuffer() ) {
        SetSelBuffer().AddSelection(m_Document, *m_SeqId);
    }

    m_ViewMenuMgr->AddActiveViews(m_Document);
    m_ViewMenuMgr->AddNewViews();//   (m_Document);
}


void CViewGenbank::AddToEditPack (CParagraph* p)
{
    if ( p == 0 ) {
        return;
    }

    //int h = m_EditPack->h() + p->h();
    //m_EditPack->size (m_EditPack->w(), h); 
    p->SetSection (m_EditPack);
    m_EditPack->add ((Fl_Widget*)p);
}


const string& CViewGenbank::GetTitle(void) const
{
    static string s_str("Flat-File View");
    return s_str;
}


void CViewGenbank::x_OnFontHelvetica()
{
    m_CurrentFont = FL_HELVETICA;
    m_TextFont->value(0);
    m_TextFont->redraw();
}


void CViewGenbank::x_OnFontTimes()
{
    m_CurrentFont = FL_TIMES;
    m_TextFont->value(1);
    m_TextFont->redraw();
}


void CViewGenbank::x_OnFontCourier()
{
    m_CurrentFont = FL_COURIER;
    m_TextFont->value(2);
    m_TextFont->redraw();
}


void CViewGenbank::x_OnFontSmall()
{
    m_CurrentFontSize = 10;
    m_TextSize->value(0);
    m_TextSize->redraw();
}


void CViewGenbank::x_OnFontNormal()
{
    m_CurrentFontSize = 12;
    m_TextSize->value(1);
    m_TextSize->redraw();
}


void CViewGenbank::x_OnFontLarge()
{
    m_CurrentFontSize = 14;
    m_TextSize->value(2);
    m_TextSize->redraw();
}


//
// help submenu
//
void CViewGenbank::x_OnHelpTextViewHelp()
{
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: view_genbank.cpp,v $
 * Revision 1000.5  2004/06/01 21:02:48  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
 *
 * Revision 1.10  2004/05/21 22:27:50  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.9  2004/04/22 16:05:51  shomrat
 * CFlatFileGenerator initialization change
 *
 * Revision 1.8  2004/04/16 14:47:57  dicuccio
 * Use appropriate ISelection interface for dynamic menus
 *
 * Revision 1.7  2004/04/07 13:05:11  dicuccio
 * Changed view API - require CPluginMessage instead of CPluginArgSet
 *
 * Revision 1.6  2004/03/26 14:14:56  shomrat
 * Use new API
 *
 * Revision 1.5  2003/12/22 19:35:41  dicuccio
 * Updated to match new APIs in IView.  Added taxonomy tree / common tree browser
 *
 * Revision 1.4  2003/12/18 14:06:28  shomrat
 * using format library instead of flat
 *
 * Revision 1.3  2003/11/24 15:45:47  dicuccio
 * Renamed CVersion to CPluginVersion
 *
 * Revision 1.2  2003/11/20 13:19:18  dicuccio
 * Fixed calling parameters for views to match new requirements - pass view's message pool name as second param
 *
 * Revision 1.1  2003/11/04 17:27:22  dicuccio
 * Split text views into three components
 *
 * ===========================================================================
 */