view_phylo_tree.cpp

来自「ncbi源码」· C++ 代码 · 共 305 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_phylo_tree.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 20:59:57  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.12
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_phylo_tree.cpp,v 1000.1 2004/06/01 20:59:57 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Vladimir Tereshkov
 *
 * File Description:
 *    
 *    
 */

#include <ncbi_pch.hpp>
#include "view_phylo_tree.hpp"

#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginInfo.hpp>
#include <gui/plugin/PluginValue.hpp>
#include <gui/objutils/utils.hpp>

#include <gui/core/idocument.hpp>
#include <gui/core/iview.hpp>
#include <gui/core/view.hpp>
#include <gui/core/view_menu.hpp>
#include <gui/core/algo_menu.hpp>
#include <gui/types.hpp>

#include <serial/serialimpl.hpp>
#include <algo/phy_tree/phy_tree_serial.hpp>
#include <gui/widgets/phylo_tree/phylo_tree_reader.hpp>


#include <serial/iterator.hpp>

BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

// We include the generated _.cpp file here.  This avoids a nasty bug in some
// versions of gcc in which inline functions are not intantiated.
#include "view_phylo_tree_.cpp"

#define TRY_TO_USE_NEW_MENU_SYSTEM

#ifdef TRY_TO_USE_NEW_MENU_SYSTEM
    #define m_MenuBar m_MenuBarNew 
#else 
    #define m_MenuBar m_MenuBarOld 
#endif

// Events map
EVENT_MAP_RX_BEGIN(CPhyloTreeView)
    EVENT_FORWARD(CViewEvent::eSelectionChanged,  m_PhyloTree)
    EVENT_FORWARD(CViewEvent::eTreeSelectionChanged, m_PhyloTree)
EVENT_MAP_RX_END

//
// standard plugin announcement boilerplate
//
void CPhyloTreeView::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CPhyloTreeView",
                 "Phylogenetic Tree Viewer",
                 "Phylogenetic Tree Viewer", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);

    args.AddArgument("tree", "Tree", CPhyTreeSerial::GetTypeInfo());
}

// addon to menuitem
#define MENU_ITEM_RADIO(cmd, label) \
    { CMenuItem::eItem, label, cmd, "", CMenuItem::eRadioItem}, 

#define MENU_ITEM_RADIO_SET(cmd, label) \
    { CMenuItem::eItem, label, cmd, "", CMenuItem::eRadioItem|CMenuItem::eSet}, 

#define MENU_ITEM_CHECK(cmd, label) \
    { CMenuItem::eItem, label, cmd, "", CMenuItem::eCheckItem}, 

#define MENU_ITEM_CHECK_SET(cmd, label) \
    { CMenuItem::eItem, label, cmd, "", CMenuItem::eCheckItem|CMenuItem::eSet}, 


static
DEFINE_MENU(Menu)
    SUBMENU("Zoom")
        MENU_ITEM(eCmdZoomIn, "Zoom In")
        MENU_ITEM(eCmdZoomOut, "Zoom Out")
        MENU_ITEM(eCmdZoomAll, "Zoom All")                
    END_SUBMENU()
    SUBMENU("Graph")       
        MENU_ITEM_RADIO_SET(eCmdSetGraphType1, "Rectangle Cladogram")
        MENU_ITEM_RADIO(eCmdSetGraphType2, "Slated Cladogram")   
        MENU_ITEM_RADIO(eCmdSetGraphType3, "Radial Tree")
        MENU_ITEM_RADIO(eCmdSetGraphType4, "Force Layout")
        MENU_SEPARATOR()
        MENU_ITEM_CHECK(eCmdUseDistances, "Distances Rendering")           
    END_SUBMENU()
END_MENU()


CPhyloTreeView::CPhyloTreeView(const CPluginMessage& msg,
                               const string& pool_name)
    : CView()
{
    m_Window.reset(x_CreateWindow());
    
    m_MenuBar->SetItems(Menu);
    m_MenuBar->SetCmdTarget(m_PhyloTree);
       
#ifdef TRY_TO_USE_NEW_MENU_SYSTEM    
    int width, height;
    this->GetSize(width, height);
    height = m_MenuBar->GetPreferredSize().Y();    
    m_MenuBar->size(width, height);    
    m_MenuBar->position(0,0);    
#endif

    // set our core components
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    const CPluginArg& arg = args["tree"];

    // extract tree from argument 
    const CPhyTreeSerial *tree =
        dynamic_cast<const CPhyTreeSerial *>(&args["tree"].AsObject());
    if (!tree) {
        throw runtime_error("CPhyloTreeView::Save: not a tree");
    }

    const IDocument* doc = arg.GetDocument();

    if (tree  &&  doc) {
        x_SetDocument(*doc);
        m_DataSource.Reset(new CPhyloTreeDataSource());  

        m_SeqIds    = tree->GetIds();
        m_TreeData  = tree->GetTree();
    }    

    // create the view menu manager
#ifndef TRY_TO_USE_NEW_MENU_SYSTEM
    m_ViewMenuMgr.reset(new CViewMenuMgr(m_MenuBar, "View", this, pool_name));
#endif

    // setting host for sending events
    m_PhyloTree->SetHost(this);
}

void CPhyloTreeView::OnDocumentChanged()
{
    if (!m_Document) {
        return;
    }
    SetTitle(m_Document->GetShortTitle() + ": " + GetTitle());    
    m_DataSource.Reset
        (new CPhyloTreeDataSource(m_TreeData, m_SeqIds,
                                  m_Document->GetScope()));
    m_PhyloTree->SetDataSource(m_DataSource.GetPointer());     
    
    if ( !GetSelBuffer() ) {
        ITERATE (vector< CConstRef<CSeq_id> >, iter, m_SeqIds) {
            SetSelBuffer().AddSelection(GetDocument(), **iter);
        }
    }

#ifndef TRY_TO_USE_NEW_MENU_SYSTEM
    m_ViewMenuMgr->AddActiveViews(m_Document);
    m_ViewMenuMgr->AddNewViews();//   (m_Document);    
#endif
}

const string& CPhyloTreeView::GetTitle(void) const
{
    static string s_str("Phylogenetic Tree View");
    return s_str;
}


void CPhyloTreeView::x_OnFileClose()
{
    Hide();
}


void CPhyloTreeView::x_OnZoomIn()
{
    m_PhyloTree->OnZoomIn();
}


void CPhyloTreeView::x_OnZoomOut()
{
    m_PhyloTree->OnZoomOut();
}

void CPhyloTreeView::x_OnZoomAll()
{
    m_PhyloTree->OnZoomAll();
}

void CPhyloTreeView::x_OnHelp()
{
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: view_phylo_tree.cpp,v $
 * Revision 1000.1  2004/06/01 20:59:57  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.12
 *
 * Revision 1.12  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.11  2004/05/20 15:31:46  tereshko
 * Implemented support for new updates-driven menu
 *
 * Revision 1.10  2004/05/06 19:44:36  tereshko
 * Added force tree layout
 *
 * Revision 1.9  2004/05/03 17:52:53  dicuccio
 * gui/utils --> gui/objutils where needed
 *
 * Revision 1.8  2004/04/28 19:29:22  tereshko
 * Changed menu structure
 *
 * Revision 1.7  2004/04/16 14:45:29  dicuccio
 * Code clean-up.  Use appropriate ISelection interface for dynamic menus
 *
 * Revision 1.6  2004/04/07 13:03:14  dicuccio
 * Changed view API - require CPluginMessage instead of CPluginArgSet.  Changed name of phy tree variable to match its origin
 *
 * Revision 1.5  2004/04/02 16:46:12  yazhuk
 * Added CScope argument to the Data Source constructor
 *
 * Revision 1.4  2004/03/30 17:12:52  tereshko
 * Added support for events broadcasting
 *
 * Revision 1.3  2004/03/02 18:31:55  tereshko
 * Added radial tree layout
 *
 * Revision 1.2  2004/02/18 15:11:59  tereshko
 * Added renderer switching handle, corrected defines
 *
 * Revision 1.1  2004/02/17 23:45:52  tereshko
 * Phylogenetic tree viewer plugin. Initial revision.
 *
 * Revision 1.4  2004/02/12 21:08:31  yazhuk
 * Reorganized menu and added new commands
 *
 * Revision 1.3  2004/01/15 20:53:16  yazhuk
 * Renamed m_Menu to m_MenuBar, added menu definition and menu setup code
 *
 * Revision 1.2  2003/12/22 19:33:15  dicuccio
 * Lots of changes.  Changed to match new APIs in IView.  Added better handling of messages received from other views
 *
 * Revision 1.1  2003/12/05 20:06:05  yazhuk
 * Initial revision
 *
  * ===========================================================================
 */