view_hit_matrix.cpp

来自「ncbi源码」· C++ 代码 · 共 288 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_hit_matrix.cpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 20:59:19  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.8
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_hit_matrix.cpp,v 1000.2 2004/06/01 20:59:19 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Andrey Yazhuk
 *
 * File Description:
 *    User-modifiable implementation file for extension of Dot Matrix
 *    viewer for GBENCH
 */

#include <ncbi_pch.hpp>
#include "view_hit_matrix.hpp"

#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginInfo.hpp>
#include <gui/plugin/PluginValue.hpp>
#include <gui/objutils/utils.hpp>

#include <serial/iterator.hpp>

BEGIN_NCBI_SCOPE

// We include the generated _.cpp file here.  This avoids a nasty bug in some
// versions of gcc in which inline functions are not intantiated.
#include "view_hit_matrix_.cpp"


//
// standard plugin announcement boilerplate
//
void CHitMatrixView::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CHitMatrixView",
                 "Dot Matrix Viewer",
                 "Dot Matrix Viewer", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);
    /*args.AddArgument("alignments", "Alignments to render",
                     CSeq_align_set::GetTypeInfo(),
                     CPluginArg::TData::e_Single);*/
    args.AddArgument("alignments", "Alignments to render",
                     CSeq_annot::GetTypeInfo(),
                     CPluginArg::TData::e_Single);
    args.SetConstraint("alignments",
                       *CPluginValueConstraint::CreateAnnotType
                       (CSeq_annot::TData::e_Align));
    /*args.SetConstraint("alignments",
                       *CPluginValueConstraint::CreateAnnotType
                       (CSeq_annot::TData::e_Align));*/
}

static
DEFINE_MENU(Menu)
    SUBMENU("Zoom")
        MENU_ITEM(eCmdZoomIn, "Zoom In")
        MENU_ITEM(eCmdZoomOut, "Zoom Out")
        MENU_ITEM(eCmdZoomAll, "Zoom All")
        MENU_ITEM(eCmdZoomObjects, "Zoom to Hits")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomSel, "Zoom to Selection")
        MENU_ITEM(eCmdZoomSelObjects, "Zoom to Selected Hits")
        MENU_ITEM(eCmdSetEqualScale, "Make Proportional")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomInX, "Zoom In Subject")
        MENU_ITEM(eCmdZoomOutX, "Zoom Out Subject")
        MENU_ITEM(eCmdZoomAllX, "Zoom All Subject")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomInY, "Zoom In Query")
        MENU_ITEM(eCmdZoomOutY, "Zoom Out Query")
        MENU_ITEM(eCmdZoomAllY, "Zoom All Query")        
    END_SUBMENU()
    SUBMENU("View")
        MENU_ITEM(eCmdChooseSeq, "Choose Sequences to Display...")
        MENU_ITEM(eCmdColorByScore, "Color by Score...")
        MENU_SEPARATOR()        
    END_SUBMENU()
END_MENU()

CHitMatrixView::CHitMatrixView(const CPluginMessage& msg,
                               const string& pool_name)
    : CAlnView()
{
    m_Window.reset(x_CreateWindow());
    
    m_MenuBar->SetItems(Menu);
    m_MenuBar->SetCmdTarget(m_AlnView);

    // set our core components
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    const CPluginArg& arg = args["alignments"];

    // extract the alignments from the argument
    const CSeq_annot* annot =
        dynamic_cast<const CSeq_annot*>(arg.GetObject());
    const IDocument* doc = arg.GetDocument();

    if (annot  &&  doc) {
        x_SetDocument(*doc);
        m_AnnotData.Reset(annot);
    }

    // create the view menu manager
    m_ViewMenuMgr.reset(new CViewMenuMgr(m_MenuBar, "View", this, pool_name));
}

void CHitMatrixView::OnDocumentChanged()
{
    if (!m_Document) {
        return;
    }

    SetTitle(m_Document->GetShortTitle() + ": " + GetTitle());

    // create our alignment manager
    m_DataSource.Reset(
            new CHitMatrixDataSource(*m_AnnotData, m_Document->GetScope()));

    CHitMatrixDataSource::TIdRefCont all_ids =  m_DataSource->GetSeqIDs();
    // choosing sequences to display
    if(all_ids.size() >1 )  {
        CHitMatrixDataSource::TIdRefCont::const_iterator  it = all_ids.begin();
        CConstRef<CSeq_id>   s_id(*it);
        CConstRef<CSeq_id>   q_id(*(++it));
        m_DataSource->SelectIds(s_id, q_id);

        m_AlnView->SetDataSource(m_DataSource.GetPointer());
    }    

    
    SetSelBuffer().Clear();
    SetSelBuffer().AddSelection(m_Document, *m_AnnotData);

    m_ViewMenuMgr->AddActiveViews(m_Document);
    m_ViewMenuMgr->AddNewViews();//   (m_Document);
}

void CHitMatrixView::OnSelectionChanged(const CSelectionBuffer& buf)
{
    if (!m_Document) {
        return;
    }
   
    SetSelBuffer().Clear();
    SetSelBuffer().AddSelection(m_Document, *m_AnnotData);

    m_ViewMenuMgr->AddActiveViews(m_Document);
    m_ViewMenuMgr->AddNewViews();//   (m_Document);
}


const string& CHitMatrixView::GetTitle(void) const
{
    static string s_str("Dot Matrix View");
    return s_str;
}


void CHitMatrixView::x_OnFileClose()
{
    Hide();
}


void CHitMatrixView::x_OnZoomIn()
{
    m_AlnView->OnZoomIn();
}


void CHitMatrixView::x_OnZoomOut()
{
    m_AlnView->OnZoomOut();
}

void CHitMatrixView::x_OnZoomAll()
{
    m_AlnView->OnZoomAll();
}

void CHitMatrixView::x_OnHelp()
{
}

/*
void CHitMatrixView::x_OnZoomSelection()
{
    if (m_AlnView) {
        m_AlnView->OnZoomSelection();
    }
}


void CHitMatrixView::x_OnZoomSequence()
{
    if (m_AlnView) {
        m_AlnView->OnZoomSequence();
    }
}


void CHitMatrixView::x_OnClearSelections()
{
    if (m_AlnView) {
        m_AlnView->OnResetSelection();
    }
}
*/


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: view_hit_matrix.cpp,v $
 * Revision 1000.2  2004/06/01 20:59:19  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.8
 *
 * Revision 1.8  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.7  2004/05/03 17:53:55  dicuccio
 * Tweaked makefiles to support new gui_objutils library
 *
 * Revision 1.6  2004/04/16 14:44:17  dicuccio
 * Pass appropriate ISelection interface to dynamic menus
 *
 * Revision 1.5  2004/04/07 13:02:00  dicuccio
 * Changed view API - require CPluginMessage instead of CPluginArgSet in ctor.
 * Changed published name of view from Hit Matrix to Dot Matrix
 *
 * Revision 1.4  2004/02/12 21:08:31  yazhuk
 * Reorganized menu and added new commands
 *
 * Revision 1.3  2004/01/15 20:53:16  yazhuk
 * Renamed m_Menu to m_MenuBar, added menu definition and menu setup code
 *
 * Revision 1.2  2003/12/22 19:33:15  dicuccio
 * Lots of changes.  Changed to match new APIs in IView.  Added better handling of messages received from other views
 *
 * Revision 1.1  2003/12/05 20:06:05  yazhuk
 * Initial revision
 *
  * ===========================================================================
 */