view_alninfo.cpp

来自「ncbi源码」· C++ 代码 · 共 267 行

/*
 * ===========================================================================
 * PRODUCTION $Log: view_alninfo.cpp,v $
 * PRODUCTION Revision 1000.5  2004/06/01 20:58:57  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.20
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: view_alninfo.cpp,v 1000.5 2004/06/01 20:58:57 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *    User-modifiable portion of the alignment informational view for GBENCH.
 */


#include <ncbi_pch.hpp>
#include "view_alninfo.hpp"
#include "alninfo_table.hpp"

#include <gui/widgets/aln_data/align_ds.hpp>
#include <gui/core/plugin_utils.hpp>
#include <gui/core/version.hpp>
#include <gui/plugin/PluginRequest.hpp>
#include <gui/plugin/PluginCommand.hpp>
#include <gui/plugin/PluginCommandSet.hpp>
#include <gui/plugin/PluginValue.hpp>
#include <objmgr/align_ci.hpp>
#include <objtools/alnmgr/alnmix.hpp>


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);


// We include the generated _.cpp file here.  This avoids a nasty bug in some
// versions of gcc in which inline functions are not intantiated.
#include "view_alninfo_.cpp"


void CAlnInfoView::GetInfo(CPluginInfo& info)
{
    info.Reset();

    // version info macro
    info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
                 string(__DATE__) + " " + string(__TIME__),
                 "CAlnInfoView",
                 "Alignment Info Viewer",
                 "Alignment Info Viewer", "");

    // command info
    CPluginCommandSet& cmds = info.SetCommands();
    CPluginCommand&    args = cmds.AddViewCommand(eViewCommand_new_view);
    args.AddArgument("alignments", "Alignments to merge and render",
                     CSeq_annot::GetTypeInfo(),
                     CPluginArg::TData::e_Single);
    args.SetConstraint("alignments",
                       *CPluginValueConstraint::CreateAnnotType
                       (CSeq_annot::TData::e_Align));
}


CAlnInfoView::CAlnInfoView(const CPluginMessage& msg, const string& pool_name)
    : CAlnView()
{
    m_Window.reset(x_CreateWindow());

    // set our core components
    const CPluginCommand& args = msg.GetRequest().GetCommand();
    const CPluginArg& arg = args["alignments"];

    // extract the alignments from the argument
    const CSeq_annot* annot =
        dynamic_cast<const CSeq_annot*>(arg.GetObject());
    const IDocument* doc = arg.GetDocument();

    if (annot  &&  doc) {
        x_SetDocument(*doc);
        m_AnnotData.Reset(annot);
    }
}


const string& CAlnInfoView::GetTitle() const
{
    static string s_str("Alignment Information");
    return s_str;
}


//void CAlnInfoView::Update(TUpdateFlags flags)
//{cout << "CAlnInfoView::Update" << endl;}
/*
    if (flags & fDocumentChanged) {
        if ( m_AnnotData) {
            m_DataSource.Reset(new CAlignDataSource(*m_AnnotData,
                                                    m_Document->GetScope()));
        }

        if (m_DataSource) {
            m_AlnInfo->Update(m_DataSource->SetAlnMgr());
        }

        m_TitleStr = m_Document->GetShortTitle() + ": " + GetTitle();
        m_Window->label(m_TitleStr.c_str());
    }
}
*/
void CAlnInfoView::OnDocumentChanged()
{
    if ( m_AnnotData) {
        m_DataSource.Reset(new CAlignDataSource());
        m_DataSource->Init(*m_AnnotData, m_Document->GetScope());
    }

    if (m_DataSource) {
        m_AlnInfo->Update(m_DataSource->SetAlnMgr());
    }

    SetTitle(m_Document->GetShortTitle() + ": " + GetTitle());
}


void CAlnInfoView::x_OnFileClose()
{
    Hide();
}


void CAlnInfoView::x_OnHelp()
{
}


void CAlnInfoView::x_OnShowSegments()
{
    m_AlnInfo->SetMode(CAlnInfoTable::eSegments);
}


void CAlnInfoView::x_OnShowSequence()
{
    m_AlnInfo->SetMode(CAlnInfoTable::eSequence);
}


void CAlnInfoView::x_OnShowScores()
{
    m_AlnInfo->SetMode(CAlnInfoTable::eScores);
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: view_alninfo.cpp,v $
 * Revision 1000.5  2004/06/01 20:58:57  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.20
 *
 * Revision 1.20  2004/05/21 22:27:49  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.19  2004/04/07 13:05:10  dicuccio
 * Changed view API - require CPluginMessage instead of CPluginArgSet
 *
 * Revision 1.18  2004/02/11 15:23:06  yazhuk
 * Replaced constructor with arguments with default constructor and Init() call
 *
 * Revision 1.17  2003/12/22 19:33:12  dicuccio
 * Lots of changes.  Changed to match new APIs in IView.  Added better handling of messages received from other views
 *
 * Revision 1.16  2003/11/24 15:45:42  dicuccio
 * Renamed CVersion to CPluginVersion
 *
 * Revision 1.15  2003/11/19 20:45:25  friedman
 * Added handling a visible range change event
 *
 * Revision 1.14  2003/11/04 12:51:27  friedman
 * Added event message pool callbacks for the document all-view message pool.
 *
 * Revision 1.13  2003/10/07 13:47:06  dicuccio
 * Renamed CPluginURL* to CPluginValue*
 *
 * Revision 1.12  2003/09/24 18:26:46  dicuccio
 * Large clean-ups to alignment viewers.  Reimplemented data sources and alignment
 * generation mechanism to be more generic.
 *
 * Revision 1.11  2003/09/04 14:54:21  dicuccio
 * Use IDocument instead of CDocument.  Changed APIs to match changes in IView
 *
 * Revision 1.10  2003/07/22 15:32:16  dicuccio
 * Changed to make use of new API in plugin_utils.hpp - GetArgValue()
 *
 * Revision 1.9  2003/06/26 15:33:41  dicuccio
 * Moved GetURLValue() from PluginURL.hpp to plugin_utils.hpp.  Fixed compilation
 * errors relating to missing #includes
 *
 * Revision 1.8  2003/06/25 17:02:59  dicuccio
 * Split CPluginHandle into a handle (pointer-to-implementation) and
 * implementation file.  Lots of #include file clean-ups.
 *
 * Revision 1.7  2003/06/20 14:53:51  dicuccio
 * Revised plugin registration - moved GetInfo() into the plugin handler
 *
 * Revision 1.6  2003/06/02 16:06:22  dicuccio
 * Rearranged src/objects/ subtree.  This includes the following shifts:
 *     - src/objects/asn2asn --> arc/app/asn2asn
 *     - src/objects/testmedline --> src/objects/ncbimime/test
 *     - src/objects/objmgr --> src/objmgr
 *     - src/objects/util --> src/objmgr/util
 *     - src/objects/alnmgr --> src/objtools/alnmgr
 *     - src/objects/flat --> src/objtools/flat
 *     - src/objects/validator --> src/objtools/validator
 *     - src/objects/cddalignview --> src/objtools/cddalignview
 * In addition, libseq now includes six of the objects/seq... libs, and libmmdb
 * replaces the three libmmdb? libs.
 *
 * Revision 1.5  2003/05/19 13:43:32  dicuccio
 * Moved gui/core/plugin --> gui/plugin/.  Merged core libraries into libgui_core
 *
 * Revision 1.4  2003/04/24 16:40:38  dicuccio
 * Updated to reflect changes in plugin API.  Added new common alignment view base
 * class - handles notions of creating alignment manager in a standard way
 *
 * Revision 1.3  2003/03/17 14:54:14  dicuccio
 * Changed base class CView - added member variable for FLTK gui component for
 * child windows, which is now maintained via an auto_ptr<>.  Eliminated
 * Show()/Hide() as a pure virtual requirement.
 *
 * Revision 1.2  2003/03/07 16:52:01  dicuccio
 * Fixed minor compilation issue for Win32 - add USING_SCOPE(objects)
 *
 * Revision 1.1  2003/03/03 18:29:55  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */