aln_table_ds.cpp

来自「ncbi源码」· C++ 代码 · 共 152 行

/*
 * ===========================================================================
 * PRODUCTION $Log: aln_table_ds.cpp,v $
 * PRODUCTION Revision 1000.1  2004/06/01 21:07:53  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.2
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: aln_table_ds.cpp,v 1000.1 2004/06/01 21:07:53 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <ncbi_pch.hpp>
#include <gui/widgets/aln_table/aln_table_ds.hpp>
#include <objmgr/align_ci.hpp>
#include <objects/seqalign/Seq_align_set.hpp>


BEGIN_NCBI_SCOPE
USING_SCOPE(objects);


CAlnTableDS::CAlnTableDS(CScope& scope,
                         const CSeq_loc& loc)
{
    TAlnProxy proxy;
    proxy.scope.Reset(&scope);
    CAlign_CI align_iter(scope, loc, SAnnotSelector());
    for ( ;  align_iter;  ++align_iter) {
        proxy.align.Reset(&align_iter.GetOriginalSeq_align());
        m_Alignments.push_back(proxy);
    }
}


CAlnTableDS::CAlnTableDS(CScope& scope,
                         const CSeq_annot& annot)
{
    if ( !annot.GetData().IsAlign() ) {
        NCBI_THROW(CException, eUnknown,
                   "Annotation is not a seq-align");
    }

    TAlnProxy proxy;
    proxy.scope.Reset(&scope);

    ITERATE (CSeq_annot::TData::TAlign, iter, annot.GetData().GetAlign()) {
        proxy.align = *iter;
        m_Alignments.push_back(proxy);
    }
}


CAlnTableDS::CAlnTableDS(CScope& scope,
                         const CSeq_align& align)
{
    TAlnProxy proxy;
    proxy.align.Reset(&align);
    proxy.scope.Reset(&scope);
    m_Alignments.push_back(proxy);
}


CAlnTableDS::CAlnTableDS(CScope& scope,
                         const CSeq_align_set& aligns)
{
    TAlnProxy proxy;
    proxy.scope.Reset(&scope);

    ITERATE (CSeq_align_set::Tdata, iter, aligns.Get()) {
        proxy.align = *iter;
        m_Alignments.push_back(proxy);
    }
}


CAlnTableDS::CAlnTableDS(CScope& scope,
                         const list< CConstRef<CSeq_align> >& aligns)
{
    TAlnProxy proxy;
    proxy.scope.Reset(&scope);

    ITERATE (list< CConstRef<CSeq_align> >, iter, aligns) {
        proxy.align = *iter;
        m_Alignments.push_back(proxy);
    }
}


void CAlnTableDS::Add(CScope& scope, const CSeq_align& align)
{
    TAlnProxy proxy;
    proxy.align.Reset(&align);
    proxy.scope.Reset(&scope);
    m_Alignments.push_back(proxy);
}


const CAlnTableDS::TAlignments& CAlnTableDS::GetAlignments(void) const
{
    return m_Alignments;
}




END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: aln_table_ds.cpp,v $
 * Revision 1000.1  2004/06/01 21:07:53  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.2
 *
 * Revision 1.2  2004/05/21 22:27:52  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.1  2004/04/16 15:56:16  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */