seqgraphic_conf.cpp

ncbi源码

/*
 * ===========================================================================
 * PRODUCTION $Log: seqgraphic_conf.cpp,v $
 * PRODUCTION Revision 1000.3  2004/06/01 21:12:49  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.24
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: seqgraphic_conf.cpp,v 1000.3 2004/06/01 21:12:49 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Mike DiCuccio
 *
 * File Description:
 *
 */

#include <ncbi_pch.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_conf.hpp>

#include <gui/widgets/seq_graphic/color_conf.hpp>
#include <gui/widgets/seq_graphic/pane_content_conf.hpp>


BEGIN_NCBI_SCOPE



CSeqGraphicConfig::CSeqGraphicConfig(objects::CPluginConfigCache* config_cache, const string& delim)
    : CThemeSet(config_cache, "SeqGraphicView", delim),
      m_FeatRenderPolicy(new CRenderPolicyConfig(config_cache)),
      m_Content(new CPaneContentConf(config_cache)),
      m_Color(new CSeqGraphicColorConfig(config_cache)),
      m_Layout(new CLayoutConfig(config_cache)),
      m_Font(new CFontConfig(config_cache)),
      m_Decorations(new CFeatConfigDecorate(config_cache))
{
    // The order in which they are added, is the order in which they will display.
    AddSettingsSet(*m_FeatRenderPolicy);
    AddSettingsSet(*m_Content);
    AddSettingsSet(*m_Layout);
    AddSettingsSet(*m_Color);
    AddSettingsSet(*m_Decorations);
    AddSettingsSet(*m_Font);

    LoadCurrentSettings(eLoad_Current);
}


CSeqGraphicConfig::~CSeqGraphicConfig()
{
}


bool CSeqGraphicConfig::GetHistogram(int type, int subtype) const
{
    return m_Content->GetHistogram(type, subtype);
}


void CSeqGraphicConfig::SetHistogram(int type, int subtype, bool hist)
{
    m_Content->SetHistogram(type, subtype, hist);
}


void CSeqGraphicConfig::SetHistogramInherited(int type, int subtype, bool inherited)
{
    m_Content->SetHistogramInherited(type, subtype, inherited);
}

    
bool CSeqGraphicConfig::GetShow(int type, int subtype) const
{
    return m_Content->GetShow(type, subtype);
}

void CSeqGraphicConfig::SetShow(int type, int subtype, bool show)
{
    m_Content->SetShow(type, subtype, show);
}

void CSeqGraphicConfig::SetShowInherited(int type, int subtype, bool inherited)
{
    m_Content->SetShowInherited(type, subtype, inherited);
}


CGlColor CSeqGraphicConfig::GetColor(int type, int subtype) const
{
    return  m_Color->GetColor(type, subtype);
}

void CSeqGraphicConfig::SetColor(int type, int subtype, CGlColor color)
{
    m_Color->SetColor(type, subtype, color);
}

void CSeqGraphicConfig::SetColorInherited(int type, int subtype, bool inherited)
{
    m_Color->SetColorInherited(type, subtype, inherited);
}


CGlColor CSeqGraphicConfig::GetElementColor(CSeqGraphicColorConfig::EDisplayElement e) const
{
    return  m_Color->GetElementColor(e);
}

void  CSeqGraphicConfig::SetElementColor(CSeqGraphicColorConfig::EDisplayElement e,  const CGlColor& c)
{
    m_Color->SetElementColor(e, c);
}


CRenderPolicyConfig::ERenderPolicys CSeqGraphicConfig::GetFeaturePanelRenderPolicy() const
{
    return m_FeatRenderPolicy->GetRenderPolicy();
}


CLayoutConfig::ELayout CSeqGraphicConfig::GetLayout() const
{
    return m_Layout->GetLayout();
}


bool CSeqGraphicConfig::GetShowAlignments() const
{
    return m_Content->GetShowAlignments();
}

void CSeqGraphicConfig::SetShowAlignments(bool b)
{
    m_Content->SetShowAlignments(b);
}

bool CSeqGraphicConfig::GetSmearAlignments() const
{
    // TO DO
    return false;
}

void CSeqGraphicConfig::SetSmearAlignments(bool )
{
    // TO DO
}

bool CSeqGraphicConfig::GetShowGraphs() const
{
    return m_Content->GetShowGraphs();
}

void CSeqGraphicConfig::SetShowGraphs(bool b)
{
    m_Content->SetShowGraphs(b);
}


bool CSeqGraphicConfig::GetShowSegmentMap() const
{
    return m_Content->GetShowSegmentMap();
}


void CSeqGraphicConfig::SetShowSegmentMap(bool b)
{
    m_Content->SetShowSegmentMap(b);
}

bool CSeqGraphicConfig::GetShowPWAlignLabels() const
{
    return m_Content->GetShowPWAlignLabels();
}


void CSeqGraphicConfig::SetShowPWAlignLabels(bool b)
{
    m_Content->SetShowPWAlignLabels(b);
}


bool CSeqGraphicConfig::GetShowProtProd() const
{
    // TO DO
    return true;
}

void CSeqGraphicConfig::SetShowProtProd(bool)
{
    // TO DO
}

TSeqPos CSeqGraphicConfig::GetOverviewCutoff() const
{
    // defines cut-off between overview and detailed modes
    return 400;  // 400 bp per pixel
}


void CSeqGraphicConfig::SetOverviewCutoff(TSeqPos)
{
    // TO DO
}


int CSeqGraphicConfig::GetRulerSpacer() const
{
    return m_Content->GetRulerSpacer();
}

void CSeqGraphicConfig::SetRulerSpacer(int spacer)
{
    m_Content->SetRulerSpacer(spacer);
}

    
TSeqPos CSeqGraphicConfig::GetGenesCutoff() const
{
    // defines more adaptive cut-off 
    // between overview and detailed modes
    // based on the number of visible genes
    return 5;
}


void CSeqGraphicConfig::SetGenesCutoff(TSeqPos)
{
    // TO DO
}


END_NCBI_SCOPE


/*
 * ===========================================================================
 * $Log: seqgraphic_conf.cpp,v $
 * Revision 1000.3  2004/06/01 21:12:49  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.24
 *
 * Revision 1.24  2004/05/21 22:27:55  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.23  2004/05/12 16:54:12  lebedev
 * Added  option to specify a space between the ruler and the rest of the dispay
 *
 * Revision 1.22  2004/05/10 15:57:54  lebedev
 * Configuration option to show/hide segment maps added.
 *
 * Revision 1.21  2004/05/07 11:12:13  lebedev
 * Configuration option to show/hide labels for pairwise alignments and mate pairs added.
 *
 * Revision 1.20  2004/04/06 13:43:50  dicuccio
 * Added API to set/get default graph/alignment rendering status
 *
 * Revision 1.19  2004/03/30 13:54:50  lebedev
 * Use EDisplayElement list from CSeqGraphicColorConfig
 *
 * Revision 1.18  2004/03/22 16:52:52  rsmith
 * add Smear Alignment setting. Always false for now.
 *
 * Revision 1.17  2004/03/02 15:26:38  lebedev
 * Configure minimum number of genes as a cut-off between
 * overview and detailed mode.
 *
 * Revision 1.16  2004/02/13 18:13:19  lebedev
 * Methods for specifying Overview/Detail resolution cutoff added
 *
 * Revision 1.15  2004/02/12 14:56:05  rsmith
 * Add skeleton methods GetShowAligments/Graphs and ProtProds.
 *
 * Revision 1.14  2004/02/05 16:05:09  rsmith
 * add decorations settings
 *
 * Revision 1.13  2004/02/04 21:28:48  rsmith
 * Add font configuration
 *
 * Revision 1.12  2004/02/04 15:17:28  rsmith
 * add CLayout member and methods
 *
 * Revision 1.11  2004/01/20 19:45:13  rsmith
 * Add definition of method GetFeaturePanelRenderPolicy
 *
 * Revision 1.10  2004/01/20 19:33:48  dicuccio
 * Removed return from functions returning void
 *
 * Revision 1.9  2004/01/20 19:24:45  ucko
 * Give the newly declared destructor a (trivial) body, to avoid link errors.
 *
 * Revision 1.8  2004/01/20 14:01:40  rsmith
 * Extensive rewrite to inherit from CThemeSet. Interface has been preserved.
 *
 * Revision 1.7  2003/12/30 15:05:57  dicuccio
 * Fixed compiler warnings on MSVC
 *
 * Revision 1.6  2003/12/29 14:52:24  rsmith
 * Get throws instead of returning special values on failure.
 *
 * Revision 1.5  2003/12/22 19:38:36  dicuccio
 * Code reformatting
 *
 * Revision 1.4  2003/12/22 12:55:51  lebedev
 * Old files removed
 *
 * Revision 1.3  2003/11/21 12:56:22  rsmith
 * Added ClearHistograms() to fix bug when loading data from the PluginConfigCache.
 *
 * Revision 1.2  2003/11/18 20:34:15  rsmith
 * Get/set all histogram settings. Add back in old get/set element colors (background, selectionsm etc.).
 *
 * Revision 1.1  2003/10/31 14:07:49  dicuccio
 * Initial revision
 *
 * ===========================================================================
 */