hit_matrix_demo_ui.cpp

来自「ncbi源码」· C++ 代码 · 共 209 行

/*
 * ===========================================================================
 * PRODUCTION $Log: hit_matrix_demo_ui.cpp,v $
 * PRODUCTION Revision 1000.2  2004/06/01 21:11:24  gouriano
 * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
 * PRODUCTION
 * ===========================================================================
 */

/*  $Id: hit_matrix_demo_ui.cpp,v 1000.2 2004/06/01 21:11:24 gouriano Exp $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors:  Andrey Yazhuk
 *
 * File Description:
 *
 */

#include <ncbi_pch.hpp>
#include "hit_matrix_demo_ui.hpp"
#include <gui/utils/message_box.hpp>

#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <serial/objistr.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <serial/serial.hpp>

BEGIN_NCBI_SCOPE
USING_SCOPE(objects);

#include "hit_matrix_demo_ui_.cpp"

DEFINE_MENU(Menu)
    SUBMENU("Zoom")
        MENU_ITEM(eCmdZoomIn, "Zoom In")
        MENU_ITEM(eCmdZoomOut, "Zoom Out")
        MENU_ITEM(eCmdZoomAll, "Zoom All")
        MENU_ITEM(eCmdZoomObjects, "Zoom to Hits")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomSel, "Zoom to Selection")
        MENU_ITEM(eCmdZoomSelObjects, "Zoom to Selected Hits")
        MENU_ITEM(eCmdSetEqualScale, "Make Proportional")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomInX, "Zoom In Subject")
        MENU_ITEM(eCmdZoomOutX, "Zoom Out Subject")
        MENU_ITEM(eCmdZoomAllX, "Zoom All Subject")
        MENU_SEPARATOR()
        MENU_ITEM(eCmdZoomInY, "Zoom In Query")
        MENU_ITEM(eCmdZoomOutY, "Zoom Out Query")
        MENU_ITEM(eCmdZoomAllY, "Zoom All Query")        
    END_SUBMENU()
    SUBMENU("View")
        MENU_ITEM(eCmdChooseSeq, "Choose Sequences to Display...")
        MENU_ITEM(eCmdColorByScore, "Color by Score...")
    END_SUBMENU()
END_MENU()

CHitMatrixDemoUI::CHitMatrixDemoUI()
{
    m_Window.reset(x_CreateWindow());
    
    m_MenuBar->SetItems(Menu);
    m_MenuBar->SetCmdTarget(m_MatrixWidget);
}


CHitMatrixDemoUI::~CHitMatrixDemoUI()
{
    // these must be deleted in proper order
    m_DataSource.Reset();
    m_Window.reset();
    m_Scope.Reset();
    m_ObjMgr.Reset();
}


void CHitMatrixDemoUI::Show(int argc, char** argv)
{
    m_Accession->value("gi|");
    m_Accession->redraw();

    m_InputFile->value("E:\\Projects\\c++\\compilers\\msvc_prj\\gbench\\blastres.asn");
    m_InputFile->redraw();

    m_Window->show(argc, argv);
    while (m_Window->shown()) {
        Fl::wait();
    }
}

void CHitMatrixDemoUI::x_OnLoadAccession()
{
    CSeq_id id(m_Accession->value());
    if (id.Which() == CSeq_id::e_not_set) {
        string msg("Accession '");
        msg += m_Accession->value();
        msg += "' not recognized as a valid accession";
        NcbiMessageBox(msg, eDialog_Ok, eIcon_Exclamation,
                       "Unhandled Accession");
        return;
    }

    if ( !m_ObjMgr ) {
        m_ObjMgr.Reset(new CObjectManager());
        m_ObjMgr->RegisterDataLoader(*new CGBDataLoader(),
                                     CObjectManager::eDefault);

        m_Scope.Reset(new CScope(*m_ObjMgr));
        m_Scope->AddDefaults();
    }

    // retrieve our sequence
    CBioseq_Handle handle = m_Scope->GetBioseqHandle(id);
    if ( !handle ) {
        string msg("Can't find sequence for accession '");
        msg += m_Accession->value();
        msg += "'";
        NcbiMessageBox(msg, eDialog_Ok, eIcon_Exclamation,
                       "Sequence Not Found");
        return;
    }
}

void CHitMatrixDemoUI::x_OnLoadFile()
{
    string filename(m_InputFile->value());
    auto_ptr<CObjectIStream>    is(CObjectIStream::Open(eSerial_AsnText, filename));

    CRef<CSeq_align_set> aset(new CSeq_align_set());
    *is >> *aset;

    if ( !m_ObjMgr ) {
        m_ObjMgr.Reset(new CObjectManager());
        m_ObjMgr->RegisterDataLoader(*new CGBDataLoader(),
                                     CObjectManager::eDefault);

        m_Scope.Reset(new CScope(*m_ObjMgr));
        m_Scope->AddDefaults();
    }

    m_DataSource.Reset(new CHitMatrixDataSource(*aset, *m_Scope));

    CHitMatrixDataSource::TIdRefCont all_ids =  m_DataSource->GetSeqIDs();
    // choosing sequences to display
    if(all_ids.size() >1 )  {
        CHitMatrixDataSource::TIdRefCont::const_iterator  it = all_ids.begin();
        CConstRef<CSeq_id>   s_id(*it);
        CConstRef<CSeq_id>   q_id(*(++it));
        m_DataSource->SelectIds(s_id, q_id);

        m_MatrixWidget->SetDataSource(m_DataSource.GetPointer());    
    }    
}

END_NCBI_SCOPE

/*
 * ===========================================================================
 * $Log: hit_matrix_demo_ui.cpp,v $
 * Revision 1000.2  2004/06/01 21:11:24  gouriano
 * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
 *
 * Revision 1.7  2004/05/21 22:27:54  gorelenk
 * Added PCH ncbi_pch.hpp
 *
 * Revision 1.6  2004/05/17 16:27:24  gorelenk
 * GetObject changed to dereferencin operator
 *
 * Revision 1.5  2004/02/12 21:07:29  yazhuk
 * Reorganized menu and added new commands
 *
 * Revision 1.4  2004/01/15 20:19:31  yazhuk
 * Added menu defintion and menu setup code
 *
 * Revision 1.3  2004/01/05 18:50:29  vasilche
 * Fixed path to include files.
 *
 * Revision 1.2  2003/12/05 17:50:09  yazhuk
 * Fixed viewer initialization code.
 *
 * Revision 1.1  2003/11/17 20:58:56  yazhuk
 * Initial revision
 *
 * ===========================================================================
 */